The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm9)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 2 of 157 Showing rows 101 - 200 (15663 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr19 9079879 9079885 + let-7 2 2 PEAK11189 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9079864 9079870 + miR-9 2 2 PEAK11189 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9080869 9080875 + miR-193 2 3 PEAK11192 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9080855 9080861 + miR-27 2 3 PEAK11192 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9081065 9081072 + miR-181 2 2 PEAK11193 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9081778 9081784 + miR-9 2 2 PEAK11196 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9084415 9084421 + miR-9 2 2 PEAK11198 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9084602 9084608 + miR-27 2 2 PEAK11199 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9084616 9084622 + miR-193 2 2 PEAK11199 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9084622 9084628 + miR-153 2 2 PEAK11199 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9088449 9088455 + miR-27 2 2 PEAK11202 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 9090142 9090148 + miR-9 2 3 PEAK11204 CDS ITN4 NM_001039959 Ahnak AHNAK nucleoprotein isoform 3
chr19 29095450 29095456 - miR-21 2 2 PEAK11290 3UTR EXN5 NM_021299 Ak3 adenylate kinase 3
chr19 29095419 29095425 - miR-27 2 2 PEAK11290 3UTR EXN5 NM_021299 Ak3 adenylate kinase 3
chr19 29095463 29095469 - miR-27 2 2 PEAK11290 3UTR EXN5 NM_021299 Ak3 adenylate kinase 3
chr19 29096466 29096472 - miR-26 2 4 PEAK11293 3UTR EXN5 NM_021299 Ak3 adenylate kinase 3
chr4 123413554 123413560 - miR-125 2 2 PEAK2834 3UTR EXN5 NM_023423 6330407G11Rik hypothetical protein LOC68050
chr8 93648389 93648395 - miR-34 2 2 PEAK5313 3UTR EXN11 NM_010241 Aktip AKT interacting protein
chr16 20608629 20608635 - miR-221 2 2 PEAK9929 CDS EXN3 AK149510 Alg3 Mus musculus kidney CCL-142 RAG cDNA RIKEN full-length enriched library clone:G430090A08 product:similar to DOLICHYL-P-MAN:MAN(5)GLCNAC(2)-PP-DOLICHYL MANNOSYLTRANSFERASE (EC 2.4.1.-) (DOL-P-MAN DEPENDENT ALPHA(1-3)-MANNOSYLTRANSFERASE) (NOT56-LIKE PROTEI
chrX 139288566 139288572 - miR-181 2 2 PEAK6470 3UTR EXN6 NM_019496 Ammecr1 AMMECR1 protein
chrX 139288573 139288579 - miR-15 2 2 PEAK6470 3UTR EXN6 NM_019496 Ammecr1 AMMECR1 protein
chr5 3747046 3747053 - miR-30 2 2 PEAK3088 CDS EXN5 AK014523 mKIAA1386 Mus musculus 0 day neonate skin cDNA RIKEN full-length enriched library clone:4631416I11 product:hypothetical Ankyrin repeat structure containing protein full insert sequence.
chr8 125418648 125418654 - miR-9 2 2 PEAK5453 CDS EXN7 BC005576 Ankrd11 ankyrin repeat domain 11
chr8 125418624 125418631 - miR-9 2 2 PEAK5453 CDS EXN7 BC005576 Ankrd11 ankyrin repeat domain 11
chr8 125418654 125418660 - miR-101 2 2 PEAK5453 CDS EXN7 BC005576 Ankrd11 ankyrin repeat domain 11
chr5 90692333 90692339 - miR-221 2 2 PEAK3359 CDS EXN22 AY026253 Ankrd17 Ankyrin repeat domain containing protein FOE.
chr5 90692370 90692376 - miR-344 2 2 PEAK3359 CDS EXN22 AY026253 Ankrd17 Ankyrin repeat domain containing protein FOE.
chr6 87084831 87084838 - miR-30 2 2 PEAK4061 3UTR EXN18 NM_054041 Antxr1 anthrax toxin receptor 1
chr5 98313748 98313754 - miR-9 2 2 PEAK3384 3UTR EXN17 NM_133738 Antxr2 anthrax toxin receptor 2
chr5 98406597 98406603 - miR-193 2 2 PEAK3385 CDS ITN10 NM_133738 Antxr2 anthrax toxin receptor 2
chr5 98406619 98406625 - miR-9 2 2 PEAK3385 CDS EXN9 NM_133738 Antxr2 anthrax toxin receptor 2
chr5 98406639 98406645 - miR-34 2 2 PEAK3385 CDS EXN9 NM_133738 Antxr2 anthrax toxin receptor 2
chr2 94253922 94253928 - miR-125 2 2 PEAK1297 CDS EXN14 AK134480 Api5 11 days embryo head cDNA RIKEN full-length enriched library clone:6230411L24 product:apoptosis inhibitor 5 full insert sequence.
chrX 109478095 109478101 + miR-138 2 2 PEAK6428 CDS EXN8 NM_026565 Apool apolipoprotein O-like
chr14 27735046 27735052 - miR-27 2 2 PEAK8978 3UTR EXN22 NM_145221 Appl1 DIP13 alpha
chr14 27736346 27736354 - miR-344 2 2 PEAK8979 3UTR EXN22 NM_145221 Appl1 DIP13 alpha
chr14 27739154 27739160 - miR-19 2 2 PEAK8980 CDS EXN20 NM_145221 Appl1 DIP13 alpha
chr14 27778045 27778051 - miR-19 2 2 PEAK8983 CDS EXN2 AK088080 Appl1 Mus musculus adult male hippocampus cDNA RIKEN full-length enriched library clone:2900057D21 product:RIKEN cDNA 2900057D21 gene full insert sequence.
chr14 27778067 27778073 - miR-21 2 2 PEAK8983 CDS EXN2 AK088080 Appl1 Mus musculus adult male hippocampus cDNA RIKEN full-length enriched library clone:2900057D21 product:RIKEN cDNA 2900057D21 gene full insert sequence.
chr14 27778063 27778070 - miR-153 2 2 PEAK8983 CDS EXN2 AK088080 Appl1 Mus musculus adult male hippocampus cDNA RIKEN full-length enriched library clone:2900057D21 product:RIKEN cDNA 2900057D21 gene full insert sequence.
chr8 125098606 125098612 - miR-17 2 2 PEAK5442 3UTR EXN5 NM_009698 Aprt adenine phosphoribosyl transferase
chr6 28375766 28375773 + miR-15 2 2 PEAK3837 CDS EXN5 NM_007480 Arf5 ADP-ribosylation factor 5
chr3 84301400 84301406 - miR-27 2 2 PEAK1994 3UTR EXN10 AK147159 Arfip1 ADP-ribosylation factor interacting protein 1
chr3 19034043 19034049 - miR-344 2 2 PEAK1813 CDS EXN7 NM_028840 Armc1 armadillo repeat-containing protein
chr4 65455634 65455640 - miR-17 2 2 PEAK2573 CDS EXN11 NM_207109 Astn2 astrotactin 2 isoform b
chr4 65455606 65455612 - miR-708 2 2 PEAK2573 CDS EXN11 NM_207109 Astn2 astrotactin 2 isoform b
chr17 80247755 80247761 - miR-181 2 2 PEAK10552 3UTR EXN13 NM_019717 Arl6ip2 ADP-ribosylation factor-like 6 interacting
chr3 101390813 101390819 - miR-15 2 2 PEAK2090 CDS EXN11 NM_144900 Atp1a1 Na+/K+ -ATPase alpha 1 subunit
chr5 68152397 68152403 - miR-153 2 2 PEAK3301 CDS EXN7 AK039919 Atp8a1 ATPase aminophospholipid transporter (APLT)
chr15 3933599 3933605 - miR-124 2 2 PEAK9360 3UTR EXN6 NM_145930 AW549877 hypothetical protein LOC106064
chr4 43049017 43049024 - miR-19 2 2 PEAK2463 CDS EXN3 NM_172691 B230312A22Rik hypothetical protein LOC230088
chr4 43049027 43049035 - miR-19 2 2 PEAK2463 CDS EXN3 NM_172691 B230312A22Rik hypothetical protein LOC230088
chr11 22736380 22736387 - miR-9 2 2 PEAK7189 CDS EXN2 BC098462 B3gnt2 UDP-GlcNAc:betaGal
chr6 13591811 13591817 - miR-17 2 2 PEAK3800 CDS EXN3 AK170526 B630005N14Rik Mus musculus 4 days neonate thymus cDNA RIKEN full-length enriched library clone:B630005N14 product:CDNA FLJ31818 FIS CLONE NT2RP6000017 homolog [Homo sapiens] full insert sequence.
chr6 13591809 13591815 - miR-26 2 2 PEAK3800 CDS EXN3 AK170526 B630005N14Rik Mus musculus 4 days neonate thymus cDNA RIKEN full-length enriched library clone:B630005N14 product:CDNA FLJ31818 FIS CLONE NT2RP6000017 homolog [Homo sapiens] full insert sequence.
chr6 13591849 13591855 - miR-153 2 2 PEAK3800 CDS EXN3 AK170526 B630005N14Rik Mus musculus 4 days neonate thymus cDNA RIKEN full-length enriched library clone:B630005N14 product:CDNA FLJ31818 FIS CLONE NT2RP6000017 homolog [Homo sapiens] full insert sequence.
chr6 13591865 13591871 - miR-17 2 2 PEAK3800 CDS ITN3 AK170526 B630005N14Rik Mus musculus 4 days neonate thymus cDNA RIKEN full-length enriched library clone:B630005N14 product:CDNA FLJ31818 FIS CLONE NT2RP6000017 homolog [Homo sapiens] full insert sequence.
chr17 27157837 27157843 - miR-124 2 2 PEAK10333 3UTR EXN6 NM_007523 Bak1 BCL2-antagonist/killer 1
chr17 27157878 27157884 - miR-344 2 2 PEAK10333 CDS EXN6 NM_007523 Bak1 BCL2-antagonist/killer 1
chr14 32071707 32071713 + miR-125 2 2 PEAK9031 CDS EXN16 NM_027088 Bap1 Brca1 associated protein 1
chr14 32071724 32071730 + miR-124 2 2 PEAK9031 CDS ITN16 NM_027088 Bap1 Brca1 associated protein 1
chr2 59737517 59737523 - miR-27 2 2 PEAK1117 3UTR EXN36 NM_001001182 Baz2b bromodomain adjacent to zinc finger domain 2B
chr2 59737518 59737524 - miR-101 2 2 PEAK1117 3UTR EXN36 NM_001001182 Baz2b bromodomain adjacent to zinc finger domain 2B
chr2 59737531 59737537 - miR-27 2 2 PEAK1117 3UTR EXN36 NM_001001182 Baz2b bromodomain adjacent to zinc finger domain 2B
chr9 72964250 72964257 + miR-27 2 2 PEAK5860 CDS EXN3 NM_198609 BC003885 ribosomal protein L24-like
chr9 72964259 72964265 + miR-138 2 2 PEAK5860 CDS EXN3 NM_198609 BC003885 ribosomal protein L24-like
chr9 72970402 72970409 + miR-193 2 2 PEAK5861 3UTR EXN6 NM_198609 BC003885 ribosomal protein L24-like
chr9 72970418 72970424 + miR-27 2 2 PEAK5861 3UTR EXN6 NM_198609 BC003885 ribosomal protein L24-like
chr10 7493831 7493837 - miR-21 2 2 PEAK6572 CDS EXN5 AK144481 BC013529 hypothetical protein LOC215751
chr13 3574398 3574404 - miR-153 2 2 PEAK8510 CDS EXN14 AK220437 BC016423 MKIAA2006 protein (Fragment).
chr13 3574374 3574380 - miR-124 2 2 PEAK8510 CDS EXN14 AK220437 BC016423 MKIAA2006 protein (Fragment).
chr9 15349325 15349331 + miR-26 2 2 PEAK5511 3UTR EXN3 NM_133214 BC017612 hypothetical protein LOC170748
chr5 34506353 34506359 - miR-30 2 2 PEAK3210 CDS EXN3 AK049414 BC023882 hypothetical protein LOC231123
chr2 25315002 25315008 - miR-193 2 2 PEAK897
chr17 46635936 46635943 + miR-125 2 2 PEAK10465 CDS EXN4 NM_207161 BC048355 putative c-Myc-responsive
chr17 46635918 46635924 + miR-17 2 2 PEAK10465 CDS EXN4 NM_207161 BC048355 putative c-Myc-responsive
chr4 88056661 88056667 + miR-15 2 2 PEAK2645 CDS ITN7 AK039602 Ptplad2 Adult male spinal cord cDNA RIKEN full-length enriched library clone:A330028I02 product:RIKEN cDNA 4933428I03 (Adult male spinal cord cDNA RIKEN full-length enriched library clone:A330070G19 product:RIKEN cDNA 4933428I03).
chr3 145596368 145596375 + miR-124 2 2 PEAK2322 3UTR EXN3 NM_009740 Bcl10 B-cell leukemia/lymphoma 10
chr12 109153047 109153053 - miR-17 2 2 PEAK8453 3UTR EXN4 NM_001079883 Bcl11b B-cell leukemia/lymphoma 11B isoform a
chr14 70886064 70886072 - miR-181 2 2 PEAK9206 CDS EXN16 NM_009755 Bmp1 bone morphogenetic protein 1
chr14 70886027 70886037 - miR-27 2 2 PEAK9206 CDS EXN16 NM_009755 Bmp1 bone morphogenetic protein 1
chr14 35226060 35226066 - miR-101 2 2 PEAK9043 3UTR EXN13 NM_009758 Bmpr1a bone morphogenetic protein receptor type 1A
chr11 106936080 106936086 - miR-30 2 2 PEAK7992 CDS EXN1 AK143675 Bptf bromodomain PHD finger transcription factor
chr6 39553664 39553670 - miR-19 2 2 PEAK3895 3UTR EXN22 NM_139294 Braf Braf transforming
chr17 34250249 34250255 - miR-125 2 2 PEAK10384 CDS EXN11 AK168525 Brd2 bromodomain containing 2 isoform a
chr17 34252321 34252327 - miR-138 2 2 PEAK10386 CDS EXN6 AK147918 Brd2 bromodomain containing 2 isoform a
chr17 34252345 34252351 - miR-708 2 2 PEAK10386 CDS EXN6 AK147918 Brd2 bromodomain containing 2 isoform a
chr18 34766709 34766715 - miR-17 2 2 PEAK10847 CDS EXN13 AK132365 Brd8 bromodomain containing 8
chr18 34766699 34766706 - miR-27 2 2 PEAK10847 CDS EXN13 AK132365 Brd8 bromodomain containing 8
chr18 34767652 34767659 - miR-27 2 2 PEAK10848 CDS EXN12 AK132365 Brd8 bromodomain containing 8
chr18 34767654 34767660 - miR-101 2 2 PEAK10848 CDS EXN12 AK132365 Brd8 bromodomain containing 8
chr12 104022921 104022928 - miR-19 2 2 PEAK8434 3UTR EXN12 NM_172806 Btbd7 BTB (POZ) domain containing 7
chr12 104022943 104022949 - miR-193 2 2 PEAK8434 3UTR EXN12 NM_172806 Btbd7 BTB (POZ) domain containing 7
chr4 108488182 108488188 - miR-125 2 2 PEAK2717 3UTR EXN6 AK017614 Btf3l4 basic transcription factor 3-like 4
chr11 70792258 70792264 - miR-17 2 2 PEAK7554 CDS EXN4 NM_007573 C1qbp complement component 1 q subcomponent binding
chr11 70792214 70792220 - miR-101 2 2 PEAK7554 CDS EXN4 NM_007573 C1qbp complement component 1 q subcomponent binding
chr9 121887604 121887610 + let-7 2 2 PEAK6146 3UTR EXN5 NM_177743 C730027P07Rik hypothetical protein LOC245050
chr9 121887642 121887648 + miR-27 2 2 PEAK6146 3UTR EXN5 NM_177743 C730027P07Rik hypothetical protein LOC245050
chr14 30854711 30854718 - miR-193 2 2 PEAK8999 3UTR EXN47 NM_028981 Cacna1d calcium channel voltage-dependent L type
chr14 30854707 30854714 - miR-30 2 2 PEAK8999 3UTR EXN47 NM_028981 Cacna1d calcium channel voltage-dependent L type
Page 2 of 157 Showing rows 101 - 200 (15663 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table