The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm9)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 1 of 157 Showing rows 1 - 100 (15663 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr15 31385898 31385904 - miR-124 7 4 PEAK9408 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31386885 31386891 - miR-30 7 3 PEAK9409 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31387224 31387230 - miR-21 3 2 PEAK9410 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388356 31388362 - miR-34 15 5 PEAK9412 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388378 31388385 - miR-9 15 5 PEAK9412 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388631 31388637 - miR-17 26 5 PEAK9413 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388613 31388619 - miR-27 26 5 PEAK9413 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388923 31388931 - miR-708 13 4 PEAK9415 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388906 31388912 - miR-124 13 4 PEAK9415 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31388911 31388917 - miR-708 13 4 PEAK9415 3UTR EXN26 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31399380 31399386 - miR-34 4 2 PEAK9417 CDS EXN22 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31399376 31399382 - miR-708 4 2 PEAK9417 CDS EXN22 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31399400 31399407 - miR-15 4 2 PEAK9417 CDS EXN22 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31399430 31399436 - miR-344 4 2 PEAK9417 CDS ITN22-EXN22 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31401442 31401448 - miR-27 4 2 PEAK9418 CDS EXN21 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31405509 31405516 - miR-124 27 5 PEAK9419 CDS EXN20 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31408048 31408055 - miR-125 7 4 PEAK9420 CDS EXN19-ITN20 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31408077 31408083 - miR-124 7 4 PEAK9420 CDS EXN19 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31428346 31428353 - miR-15 8 5 PEAK9422 CDS EXN6 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31428364 31428371 - miR-15 8 5 PEAK9422 CDS EXN6 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31430718 31430725 - miR-30 8 3 PEAK9423 CDS EXN5 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31430689 31430695 - miR-34 8 3 PEAK9423 CDS EXN5 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31432502 31432508 - miR-19 46 5 PEAK9424 CDS EXN4 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31432597 31432603 - miR-124 46 5 PEAK9425 CDS EXN4 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr15 31439508 31439514 - miR-101 9 3 PEAK9426 CDS EXN2 NM_172606 March6 membrane-associated ring finger (C3HC4) 6
chr10 58627171 58627177 - miR-27 10 4 PEAK6715 3UTR EXN10 NM_001024911 Sept10 septin 10 isoform 2
chr10 58627187 58627195 - miR-124 10 4 PEAK6715 3UTR EXN10 NM_001024911 Sept10 septin 10 isoform 2
chr12 87156657 87156665 - miR-27 2 2 PEAK8369 3UTR EXN5 NM_021446 0610007P14Rik hypothetical protein LOC58520
chr12 87156643 87156651 - miR-15 2 2 PEAK8369 3UTR EXN5 NM_021446 0610007P14Rik hypothetical protein LOC58520
chr12 87160520 87160526 - miR-19 3 2 PEAK8371 CDS ITN3 NM_021446 0610007P14Rik hypothetical protein LOC58520
chr12 87160513 87160519 - miR-181 3 2 PEAK8371 CDS EXN3 NM_021446 0610007P14Rik hypothetical protein LOC58520
chr11 51499496 51499502 - miR-138 2 2 PEAK7364 CDS EXN2 NM_025319 0610009B22Rik hypothetical protein LOC66050
chr11 51499452 51499458 - miR-193 2 2 PEAK7364 CDS EXN2 NM_025319 0610009B22Rik hypothetical protein LOC66050
chr16 14299375 14299382 - miR-27 3 2 PEAK9889 3UTR EXN5 NM_025345 0610037P05Rik hypothetical protein LOC66086
chr12 55746881 55746887 - miR-125 8 4 PEAK8226 3UTR EXN2 NM_134054 1110002B05Rik hypothetical protein LOC104725
chr12 55746864 55746870 - miR-708 8 4 PEAK8226 3UTR EXN2 NM_134054 1110002B05Rik hypothetical protein LOC104725
chr12 55746887 55746893 - miR-26 8 4 PEAK8226 3UTR EXN2 NM_134054 1110002B05Rik hypothetical protein LOC104725
chr7 135840735 135840741 - miR-344 3 2 PEAK4855 3UTR EXN16 NM_145955 1110007A13Rik hypothetical protein LOC210711
chr7 135840740 135840746 - miR-27 3 2 PEAK4855 3UTR EXN16 NM_145955 1110007A13Rik hypothetical protein LOC210711
chr7 135840976 135840982 - miR-26 4 3 PEAK4856 3UTR EXN16 NM_145955 1110007A13Rik hypothetical protein LOC210711
chr7 135840969 135840976 - miR-181 4 3 PEAK4856 3UTR EXN16 NM_145955 1110007A13Rik hypothetical protein LOC210711
chr7 135840965 135840971 - miR-101 4 3 PEAK4856 3UTR EXN16 NM_145955 1110007A13Rik hypothetical protein LOC210711
chr7 135841284 135841290 - miR-27 4 3 PEAK4857 3UTR EXN12 AK083385 1110007A13Rik Mus musculus 2 days neonate thymus thymic cells cDNA RIKEN full-length enriched library clone:C920026L02 product:hypothetical protein full insert sequence.
chr7 135852670 135852676 - miR-15 2 2 PEAK4858 CDS EXN5 AK083385 1110007A13Rik Mus musculus 2 days neonate thymus thymic cells cDNA RIKEN full-length enriched library clone:C920026L02 product:hypothetical protein full insert sequence.
chr10 128237525 128237532 - miR-708 2 2 PEAK7120 3UTR EXN5 NM_178066 1110012D08Rik hypothetical protein LOC73827
chr10 128237685 128237691 - miR-221 2 3 PEAK7121 3UTR EXN5 NM_178066 1110012D08Rik hypothetical protein LOC73827
chr17 66686623 66686629 - miR-34 9 4 PEAK10527 3UTR EXN15 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr17 66687141 66687149 - miR-181 14 4 PEAK10528 3UTR EXN15 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr17 66687247 66687253 - miR-19 4 3 PEAK10529 3UTR EXN15 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr17 66687254 66687260 - miR-101 4 3 PEAK10529 3UTR EXN15 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr17 66692227 66692233 - miR-708 4 3 PEAK10530 CDS EXN13 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr17 66692261 66692268 - miR-124 4 3 PEAK10530 CDS EXN13 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr17 66787507 66787514 - miR-26 4 4 PEAK10531 CDS EXN2 AK147691 1110012J17Rik CDNA RIKEN full-length enriched library clone:M421002C03 product:hypothetical protein full insert sequence.
chr12 86260619 86260626 - miR-19 5 3 PEAK8361 3UTR EXN20 AK147878 1110018G07Rik hypothetical protein LOC68497
chr12 86261733 86261740 - miR-30 2 2 PEAK8362 CDS EXN19 AK147878 1110018G07Rik hypothetical protein LOC68497
chr12 86261743 86261749 - miR-15 2 2 PEAK8362 CDS EXN19 AK147878 1110018G07Rik hypothetical protein LOC68497
chr12 86281162 86281170 - miR-27 8 3 PEAK8363 CDS EXN5 AK147491 1110018G07Rik hypothetical protein LOC68497
chr12 86281169 86281175 - miR-344 8 3 PEAK8363 CDS EXN5 AK147491 1110018G07Rik hypothetical protein LOC68497
chr12 86292166 86292172 - let-7 6 3 PEAK8364 5UTR EXN2 AK147491 1110018G07Rik hypothetical protein LOC68497
chr12 86292197 86292203 - miR-26 6 3 PEAK8364 5UTR EXN2 AK147491 1110018G07Rik hypothetical protein LOC68497
chr1 66824664 66824670 - miR-181 3 2 PEAK192 CDS EXN4 AK081413 1110028C15Rik hypothetical protein LOC68691
chr1 66824668 66824674 - miR-101 3 2 PEAK192 CDS EXN4 AK081413 1110028C15Rik hypothetical protein LOC68691
chr19 21693658 21693664 - miR-9 2 2 PEAK11255 CDS EXN2 NM_025423 1110059E24Rik RIKEN cDNA 1110059E24
chr9 122857131 122857137 - miR-708 6 4 PEAK6158 CDS EXN3 NM_025419 1110059G10Rik hypothetical protein LOC66202
chr9 122857176 122857182 - miR-193 6 4 PEAK6158 CDS EXN3 NM_025419 1110059G10Rik hypothetical protein LOC66202
chr14 79688737 79688743 - let-7 2 2 PEAK9252 3UTR EXN5 NM_025427 1190002H23Rik response gene to complement 32
chr14 79688743 79688750 - miR-30 2 2 PEAK9252 3UTR EXN5 NM_025427 1190002H23Rik response gene to complement 32
chr14 79688748 79688755 - miR-17 2 2 PEAK9252 3UTR EXN5 NM_025427 1190002H23Rik response gene to complement 32
chr6 53765604 53765610 - miR-124 6 4 PEAK3946 3UTR EXN1 NM_025817 1200009O22Rik hypothetical protein LOC66873
chr6 53765580 53765586 - miR-9 6 4 PEAK3946 3UTR EXN1 NM_025817 1200009O22Rik hypothetical protein LOC66873
chr6 53765593 53765599 - miR-101 6 4 PEAK3946 3UTR EXN1 NM_025817 1200009O22Rik hypothetical protein LOC66873
chr6 53765614 53765621 - miR-30 6 4 PEAK3946 3UTR EXN1 NM_025817 1200009O22Rik hypothetical protein LOC66873
chr6 53767771 53767777 - miR-124 3 3 PEAK3949 3UTR EXN1 NM_025817 1200009O22Rik hypothetical protein LOC66873
chr6 53767742 53767748 - miR-124 3 3 PEAK3949 3UTR EXN1 NM_025817 1200009O22Rik hypothetical protein LOC66873
chr1 153215280 153215286 - miR-27 7 4 PEAK489 3UTR EXN20 NM_025819 1200016B10Rik hypothetical protein LOC66875
chr1 153215306 153215312 - miR-124 7 4 PEAK489 3UTR EXN20 NM_025819 1200016B10Rik hypothetical protein LOC66875
chr1 153215283 153215290 - miR-181 7 4 PEAK489 3UTR EXN20 NM_025819 1200016B10Rik hypothetical protein LOC66875
chr1 153215464 153215470 - miR-181 6 4 PEAK490 3UTR EXN20 NM_025819 1200016B10Rik hypothetical protein LOC66875
chr1 153215469 153215475 - miR-9 6 4 PEAK490 3UTR EXN20 NM_025819 1200016B10Rik hypothetical protein LOC66875
chr17 24352538 24352544 - miR-708 2 2 PEAK10290 3UTR EXN10 NM_028056 1600002H07Rik hypothetical protein LOC72016
chr17 24352558 24352564 - let-7 2 2 PEAK10290 3UTR EXN10 NM_028056 1600002H07Rik hypothetical protein LOC72016
chr1 52982432 52982438 - miR-124 7 4 PEAK122 5UTR EXN2 AK006523 1700019D03Rik hypothetical protein LOC67080
chr1 52982420 52982426 - miR-9 7 4 PEAK122 5UTR EXN2 AK006523 1700019D03Rik hypothetical protein LOC67080
chr1 52982423 52982429 - miR-34 7 4 PEAK122 5UTR EXN2 AK006523 1700019D03Rik hypothetical protein LOC67080
chr1 52982459 52982465 - miR-26 7 4 PEAK122 5UTR EXN2 AK006523 1700019D03Rik hypothetical protein LOC67080
chr1 52982469 52982476 - miR-9 7 4 PEAK122 5UTR EXN2 AK006523 1700019D03Rik hypothetical protein LOC67080
chr10 5891828 5891835 - let-7 7 3 PEAK6557 5UTR EXN6 AK006776 1700052N19Rik Mus musculus adult male testis cDNA RIKEN full-length enriched library clone:1700052N19 product:hypothetical protein full insert sequence.
chr10 5891845 5891851 - miR-26 7 3 PEAK6557 5UTR EXN6 AK006776 1700052N19Rik Mus musculus adult male testis cDNA RIKEN full-length enriched library clone:1700052N19 product:hypothetical protein full insert sequence.
chr11 104199487 104199493 - miR-15 3 3 PEAK7951 CDS EXN11 BC054752 1700081L11Rik hypothetical protein LOC76719
chr11 104204904 104204910 - miR-9 4 3 PEAK7952 CDS EXN1 AK208880 mKIAA1267 Mus musculus mRNA for mKIAA1267 protein.
chr11 104204915 104204921 - miR-344 4 3 PEAK7952 CDS EXN1 AK208880 mKIAA1267 Mus musculus mRNA for mKIAA1267 protein.
chr11 104285449 104285455 - miR-34 4 2 PEAK7953 CDS EXN2 AK161514 1700081L11Rik hypothetical protein LOC76719
chr11 104285437 104285443 - miR-34 4 2 PEAK7953 CDS EXN2 AK161514 1700081L11Rik hypothetical protein LOC76719
chr11 104285447 104285453 - miR-193 4 2 PEAK7953 CDS EXN2 AK161514 1700081L11Rik hypothetical protein LOC76719
chr11 104285463 104285469 - miR-124 4 2 PEAK7953 CDS EXN2 AK161514 1700081L11Rik hypothetical protein LOC76719
chr11 104285838 104285844 - miR-34 15 4 PEAK7954 CDS EXN2 AK161514 1700081L11Rik hypothetical protein LOC76719
chr4 25181770 25181776 - let-7 13 4 PEAK2406 CDS EXN15 NM_026194 1810074P20Rik hypothetical protein LOC67490
chr4 106811460 106811466 - miR-26 3 3 PEAK2701 3UTR EXN5 NM_025617 2210012G02Rik hypothetical protein LOC66526
chr4 106838211 106838217 - miR-15 5 3 PEAK2702 CDS EXN3 NM_025617 2210012G02Rik hypothetical protein LOC66526
chr4 106838226 106838234 - miR-9 5 3 PEAK2702 CDS EXN3 NM_025617 2210012G02Rik hypothetical protein LOC66526
Page 1 of 157 Showing rows 1 - 100 (15663 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table