The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm9)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 1 of 157 Showing rows 1 - 100 (15663 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr1 196643011 196643018 + miR-101 6 3 PEAK806 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196642988 196642994 + miR-19 6 3 PEAK806 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196641414 196641420 + miR-17 10 3 PEAK805 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196641395 196641401 + miR-124 10 3 PEAK805 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196639461 196639469 + miR-26 25 4 PEAK803 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196639445 196639453 + miR-30 25 4 PEAK803 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196638646 196638652 + miR-27 7 5 PEAK802 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196638612 196638618 + miR-21 7 5 PEAK802 3UTR EXN6 BC051045 Plxna2 Plxna2 protein.
chr1 196637104 196637111 + let-7 18 5 PEAK801 CDS EXN5 BC051045 Plxna2 Plxna2 protein.
chr1 196637097 196637103 + miR-181 18 5 PEAK801 CDS EXN5 BC051045 Plxna2 Plxna2 protein.
chr1 196637070 196637076 + miR-708 18 5 PEAK801 CDS EXN5 BC051045 Plxna2 Plxna2 protein.
chr1 196633743 196633749 + miR-27 37 5 PEAK800 CDS EXN3 BC051045 Plxna2 Plxna2 protein.
chr1 196623947 196623953 + let-7 6 3 PEAK799 CDS EXN22 NM_008882 Plxna2 plexin A2
chr1 196623936 196623942 + miR-15 6 3 PEAK799 CDS EXN22 NM_008882 Plxna2 plexin A2
chr1 195048093 195048099 - let-7 3 2 PEAK798 3UTR EXN7 NM_008288 Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1
chr1 195048064 195048071 - miR-19 3 2 PEAK798 3UTR EXN7 NM_008288 Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1
chr1 195048025 195048031 - miR-17 7 4 PEAK797 3UTR EXN7 NM_008288 Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1
chr1 195048008 195048014 - miR-27 7 4 PEAK797 3UTR EXN7 NM_008288 Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1
chr1 195048003 195048009 - miR-26 7 4 PEAK797 3UTR EXN7 NM_008288 Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1
chr1 194806672 194806678 - miR-124 3 3 PEAK795 CDS ITN3 AK051175 sytXIV Mus musculus sytXIV mRNA for synaptotagmin XIV complete cds.
chr1 193737006 193737014 + let-7 7 4 PEAK792 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193736994 193737000 + miR-9 7 4 PEAK792 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193736818 193736824 + miR-26 11 5 PEAK791 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193736815 193736821 + miR-124 11 5 PEAK791 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193736712 193736718 + miR-181 11 5 PEAK790 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193736706 193736712 + miR-9 11 5 PEAK790 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193735232 193735239 + miR-26 10 4 PEAK789 3UTR EXN2 NM_009579 Slc30a1 solute carrier family 30 (zinc transporter)
chr1 193600243 193600251 + miR-138 5 4 PEAK787 CDS EXN7 NM_172266 Lpgat1 lysophosphatidylglycerol acyltransferase 1
chr1 193600239 193600245 + let-7 5 4 PEAK787 CDS EXN7 NM_172266 Lpgat1 lysophosphatidylglycerol acyltransferase 1
chr1 193587474 193587480 + miR-9 14 4 PEAK786 CDS EXN6 NM_172266 Lpgat1 lysophosphatidylglycerol acyltransferase 1
chr1 193180830 193180836 - miR-21 3 3 PEAK785 CDS EXN7 NM_144880 Ppp2r5a protein phosphatase 2 regulatory subunit B
chr1 193180799 193180806 - miR-153 3 3 PEAK785 CDS EXN7 NM_144880 Ppp2r5a protein phosphatase 2 regulatory subunit B
chr1 193178440 193178446 - miR-138 12 3 PEAK784 CDS EXN11 NM_144880 Ppp2r5a protein phosphatase 2 regulatory subunit B
chr1 193178421 193178428 - miR-9 12 3 PEAK784 CDS EXN11 NM_144880 Ppp2r5a protein phosphatase 2 regulatory subunit B
chr1 192772187 192772193 - miR-181 2 2 PEAK782 3UTR EXN8 NM_144879 Vash2 vasohibin 2
chr1 191697379 191697386 + miR-34 3 3 PEAK781 3UTR EXN19 AK156480 Ptpn14 protein tyrosine phosphatase non-receptor type
chr1 191694979 191694986 + miR-221 4 2 PEAK780 3UTR EXN19 AK156480 Ptpn14 protein tyrosine phosphatase non-receptor type
chr1 191033373 191033379 - miR-181 3 3 PEAK779 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033363 191033369 - miR-181 3 3 PEAK779 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033346 191033352 - miR-221 3 3 PEAK779 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033209 191033215 - miR-34 14 5 PEAK778 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033207 191033213 - miR-193 14 5 PEAK778 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033201 191033209 - miR-124 14 5 PEAK778 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 190036809 190036815 + miR-15 8 5 PEAK777 3UTR EXN7 NM_011935 Esrrg estrogen-related receptor gamma
chr1 190036806 190036812 + miR-221 8 5 PEAK777 3UTR EXN7 NM_011935 Esrrg estrogen-related receptor gamma
chr1 189173183 189173189 + miR-9 7 4 PEAK776 5UTR ITN2 BC072557 BC072557 Mus musculus cDNA clone IMAGE:5685628 partial cds.
chr1 189173173 189173180 + let-7 7 4 PEAK776 5UTR ITN2 BC072557 BC072557 Mus musculus cDNA clone IMAGE:5685628 partial cds.
chr1 185861408 185861415 + miR-9 5 4 PEAK775 CDS EXN2 NM_022019 Dusp10 dual specificity phosphatase 10
chr1 185861382 185861388 + miR-9 5 4 PEAK775 CDS EXN2 NM_022019 Dusp10 dual specificity phosphatase 10
chr1 184817510 184817516 + miR-34 7 4 PEAK774 CDS EXN5 NM_144796 Susd4 sushi domain containing 4
chr1 184788724 184788731 + miR-124 9 3 PEAK773 CDS EXN4 NM_144796 Susd4 sushi domain containing 4
chr1 184398280 184398287 - miR-17 3 3 PEAK772 3UTR EXN21 NM_009794 Capn2 calpain 2
chr1 184398265 184398271 - miR-26 3 3 PEAK772 3UTR EXN21 NM_009794 Capn2 calpain 2
chr1 184397429 184397436 - miR-124 14 5 PEAK771 3UTR EXN21 NM_009794 Capn2 calpain 2
chr1 184397409 184397416 - miR-101 14 5 PEAK771 3UTR EXN21 NM_009794 Capn2 calpain 2
chr1 184376474 184376480 + miR-17 9 4 PEAK770 CDS EXN5 AK134556 Trp53bp2 tumor protein p53 binding protein 2
chr1 184376468 184376475 + miR-124 9 4 PEAK770 CDS EXN5 AK134556 Trp53bp2 tumor protein p53 binding protein 2
chr1 183886589 183886595 - miR-9 3 2 PEAK769 CDS EXN3 AK020248 Enah Mus musculus adult male colon cDNA RIKEN full-length enriched library clone:9030215D04 product:enabled homolog (Drosophila) full insert sequence.
chr1 183886549 183886556 - miR-124 3 2 PEAK769 CDS EXN3 AK020248 Enah Mus musculus adult male colon cDNA RIKEN full-length enriched library clone:9030215D04 product:enabled homolog (Drosophila) full insert sequence.
chr1 183860858 183860864 - let-7 5 3 PEAK768 CDS EXN5 NM_008680 Enah enabled homolog isoform 2
chr1 183852577 183852583 - miR-193 3 2 PEAK767 CDS EXN7 NM_008680 Enah enabled homolog isoform 2
chr1 183852217 183852223 - miR-21 3 2 PEAK766 CDS EXN7 NM_008680 Enah enabled homolog isoform 2
chr1 183835994 183836000 - miR-34 3 3 PEAK764 CDS EXN15 NM_008680 Enah enabled homolog isoform 2
chr1 183835959 183835966 - miR-26 3 3 PEAK764 3UTR EXN15 NM_008680 Enah enabled homolog isoform 2
chr1 183835333 183835339 - miR-124 10 5 PEAK762 3UTR EXN15 NM_008680 Enah enabled homolog isoform 2
chr1 183835306 183835312 - miR-9 10 5 PEAK762 3UTR EXN15 NM_008680 Enah enabled homolog isoform 2
chr1 183745792 183745798 - miR-153 2 2 PEAK761 3UTR EXN14 NM_133815 Lbr lamin B receptor
chr1 183745764 183745771 - miR-221 2 2 PEAK761 3UTR EXN14 NM_133815 Lbr lamin B receptor
chr1 183107432 183107438 - miR-19 6 3 PEAK759
chr1 183106004 183106010 - miR-101 8 5 PEAK758
chr1 183105973 183105980 - let-7 8 5 PEAK758
chr1 182742033 182742039 - miR-34 7 4 PEAK757 CDS EXN2 AK160635 H3f3b H3 histone family 3B
chr1 182732833 182732839 - miR-221 3 2 PEAK754 3UTR EXN4 NM_008210 H3f3a H3 histone family 3A
chr1 182529156 182529164 + miR-125 5 4 PEAK752 CDS EXN20 NM_007415 Parp1 poly (ADP-ribose) polymerase family member 1
chr1 182529144 182529151 + miR-34 5 4 PEAK752 CDS EXN20 NM_007415 Parp1 poly (ADP-ribose) polymerase family member 1
chr1 182515990 182515998 + let-7 5 3 PEAK751 CDS EXN8 NM_007415 Parp1 poly (ADP-ribose) polymerase family member 1
chr1 181676049 181676055 - miR-153 3 2 PEAK749
chr1 181676044 181676052 - miR-17 3 2 PEAK749
chr1 181675950 181675956 - miR-124 8 4 PEAK748
chr1 181675936 181675942 - miR-30 8 4 PEAK748
chr1 181675930 181675936 - miR-181 8 4 PEAK748
chr1 181675915 181675923 - let-7 8 4 PEAK748
chr1 181675730 181675736 - miR-124 2 2 PEAK747
chr1 181675724 181675731 - miR-15 2 2 PEAK747
chr1 181675682 181675689 - miR-27 6 2 PEAK746
chr2 181591624 181591630 + miR-124 9 4 PEAK1782 3UTR EXN7 NM_153594 Pcmtd2 protein-L-isoaspartate (D-aspartate)
chr2 181560212 181560218 + miR-9 3 3 PEAK1781 CDS EXN16 AF004294 Myt1 myelin transcription factor 1
chr2 181539862 181539868 + miR-30 3 2 PEAK1780 CDS ITN5 AF004294 Myt1 myelin transcription factor 1
chr2 181539831 181539837 + miR-9 3 2 PEAK1780 CDS EXN5 AF004294 Myt1 myelin transcription factor 1
chr2 181539824 181539830 + let-7 3 2 PEAK1780 CDS EXN5 AF004294 Myt1 myelin transcription factor 1
chr2 181454497 181454505 + miR-19 3 3 PEAK1779 3UTR EXN4 NM_011012 Oprl1 opioid receptor-like 1
chr2 181423180 181423187 - miR-9 3 2 PEAK1778 3UTR EXN6 NM_026446 Rgs19 regulator of G-protein signaling 19
chr2 181420605 181420611 + miR-17 2 2 PEAK1777 CDS EXN5 NM_009326 Tcea2 transcription elongation factor A protein 2
chr2 181420568 181420574 + miR-27 2 2 PEAK1777 CDS EXN5 NM_009326 Tcea2 transcription elongation factor A protein 2
chr2 181404647 181404653 - miR-15 2 2 PEAK1776 3UTR EXN2 NM_009236 Sox18 SRY-box containing gene 18
chr2 181404623 181404629 - miR-27 2 2 PEAK1776 3UTR EXN2 NM_009236 Sox18 SRY-box containing gene 18
chr2 181404611 181404617 - miR-17 2 2 PEAK1776 3UTR EXN2 NM_009236 Sox18 SRY-box containing gene 18
chr2 181283457 181283463 + miR-153 9 4 PEAK1775 CDS EXN4 NM_016775 Dnajc5 DnaJ (Hsp40) homolog subfamily C member 5
chr2 181283443 181283450 + miR-15 9 4 PEAK1775 CDS EXN4 NM_016775 Dnajc5 DnaJ (Hsp40) homolog subfamily C member 5
chr2 181283413 181283420 + miR-15 9 4 PEAK1775 CDS EXN4 NM_016775 Dnajc5 DnaJ (Hsp40) homolog subfamily C member 5
Page 1 of 157 Showing rows 1 - 100 (15663 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table