The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm9)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 1 of 157 Showing rows 1 - 100 (15663 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr1 82872880 82872886 + miR-17 10 4 PEAK260 CDS EXN5 NM_010472 Hrb HIV-1 Rev binding protein
chr1 94938922 94938929 - miR-193 9 4 PEAK322 CDS EXN29 NM_008440 Kif1a kinesin family member 1A
chr1 94915598 94915604 - miR-15 4 2 PEAK317 CDS EXN47 NM_008440 Kif1a kinesin family member 1A
chr1 94915555 94915561 - miR-124 4 2 PEAK317 CDS EXN47 NM_008440 Kif1a kinesin family member 1A
chr1 94914898 94914905 - let-7 5 3 PEAK316 3UTR EXN48 NM_008440 Kif1a kinesin family member 1A
chr1 94913771 94913777 - miR-181 12 5 PEAK313
chr1 94913754 94913760 - miR-101 12 5 PEAK313
chr1 94912276 94912282 - miR-708 17 5 PEAK308
chr1 94912125 94912133 - miR-30 17 5 PEAK306
chr1 94912101 94912107 - miR-708 17 5 PEAK306
chr1 94912094 94912101 - miR-101 17 5 PEAK306
chr1 164238056 164238062 - miR-26 2 2 PEAK574 CDS EXN10 NM_001038619 Dnm3 dynamin 3
chr1 164147987 164147993 + let-7 3 3 PEAK571 CDS EXN1 NR_002870 Dnm3os Hypothetical protein Hag2.
chr1 108621481 108621487 - miR-34 2 2 PEAK365 CDS EXN10 NM_027534 Fvt1 follicular lymphoma variant translocation 1
chr1 82872872 82872878 + miR-17 10 4 PEAK260 CDS EXN5 NM_010472 Hrb HIV-1 Rev binding protein
chr1 91791578 91791585 + let-7 7 3 PEAK290 3UTR EXN14 AK147521 Centg2 centaurin gamma 2 isoform 2
chr1 77379541 77379547 - miR-34 4 2 PEAK245 CDS EXN13 NM_007936 Epha4 Eph receptor A4
chr1 180259272 180259278 - let-7 18 5 PEAK737 5UTR EXN1 AK080656 AK080656 Mus musculus adult male medulla oblongata cDNA RIKEN full-length enriched library clone:6330541P14 product:unclassifiable full insert sequence.
chr1 94938925 94938931 - miR-34 9 4 PEAK322 CDS EXN29 NM_008440 Kif1a kinesin family member 1A
chr1 94940252 94940258 - miR-19 4 3 PEAK324 CDS ITN27 NM_008440 Kif1a kinesin family member 1A
chr1 94955448 94955455 - miR-27 4 3 PEAK325 CDS EXN19 NM_008440 Kif1a kinesin family member 1A
chr1 84392289 84392296 - miR-181 7 4 PEAK266 CDS EXN11 NM_152915 Dner delta/notch-like EGF-related receptor
chr1 84692299 84692305 - miR-153 4 3 PEAK267 5UTR-CDS EXN1 AK030642 Dner delta/notch-like EGF-related receptor
chr1 82872874 82872882 + miR-19 10 4 PEAK260 CDS EXN5 NM_010472 Hrb HIV-1 Rev binding protein
chr1 94978882 94978888 - miR-101 12 4 PEAK332 CDS ITN3 NM_008440 Kif1a kinesin family member 1A
chr1 94975338 94975344 - let-7 13 3 PEAK331 CDS EXN3 NM_008440 Kif1a kinesin family member 1A
chr1 94972882 94972888 - miR-101 10 5 PEAK330 CDS EXN6 NM_008440 Kif1a kinesin family member 1A
chr1 94972880 94972887 - miR-27 10 5 PEAK330 CDS EXN6 NM_008440 Kif1a kinesin family member 1A
chr1 94972727 94972733 - miR-193 19 5 PEAK329 CDS EXN6 NM_008440 Kif1a kinesin family member 1A
chr1 94972737 94972745 - miR-125 19 5 PEAK329 CDS EXN6 NM_008440 Kif1a kinesin family member 1A
chr1 94972749 94972755 - let-7 19 5 PEAK329 CDS EXN6 NM_008440 Kif1a kinesin family member 1A
chr1 94971637 94971643 - miR-27 7 4 PEAK328 CDS EXN7 NM_008440 Kif1a kinesin family member 1A
chr1 94971618 94971624 - miR-181 7 4 PEAK328 CDS EXN7 NM_008440 Kif1a kinesin family member 1A
chr1 163919420 163919426 - miR-124 3 2 PEAK568 3UTR EXN21 NM_001038619 Dnm3 dynamin 3
chr1 163920816 163920822 - miR-15 2 2 PEAK569 3UTR EXN21 NM_001038619 Dnm3 dynamin 3
chr1 163920843 163920850 - miR-138 2 2 PEAK569 3UTR EXN21 NM_001038619 Dnm3 dynamin 3
chr1 94971610 94971616 - miR-138 7 4 PEAK328 CDS EXN7 NM_008440 Kif1a kinesin family member 1A
chr1 94955472 94955479 - miR-221 4 3 PEAK325 CDS ITN19-EXN19 NM_008440 Kif1a kinesin family member 1A
chr1 164148046 164148052 + miR-193 7 3 PEAK572 CDS EXN1 NR_002870 Dnm3os Hypothetical protein Hag2.
chr1 164148022 164148028 + miR-19 7 3 PEAK572 CDS EXN1 NR_002870 Dnm3os Hypothetical protein Hag2.
chr1 191033207 191033213 - miR-193 14 5 PEAK778 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033209 191033215 - miR-34 14 5 PEAK778 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 38398604 38398611 - miR-708 3 3 PEAK94 CDS EXN7 AK046648 Aff3 Mus musculus 14 17 days embryo head cDNA RIKEN full-length enriched library clone:3222402O04 product:similar to LAF-4 PROTEIN (LYMPHOID NUCLEAR PROTEIN RELATED TO AF4) [Homo sapiens] full insert sequence.
chr1 38398615 38398621 - miR-15 3 3 PEAK94 CDS EXN7 AK046648 Aff3 Mus musculus 14 17 days embryo head cDNA RIKEN full-length enriched library clone:3222402O04 product:similar to LAF-4 PROTEIN (LYMPHOID NUCLEAR PROTEIN RELATED TO AF4) [Homo sapiens] full insert sequence.
chr1 38398597 38398603 - miR-9 3 3 PEAK94 CDS EXN7 AK046648 Aff3 Mus musculus 14 17 days embryo head cDNA RIKEN full-length enriched library clone:3222402O04 product:similar to LAF-4 PROTEIN (LYMPHOID NUCLEAR PROTEIN RELATED TO AF4) [Homo sapiens] full insert sequence.
chr1 38398600 38398606 - miR-34 3 3 PEAK94 CDS EXN7 AK046648 Aff3 Mus musculus 14 17 days embryo head cDNA RIKEN full-length enriched library clone:3222402O04 product:similar to LAF-4 PROTEIN (LYMPHOID NUCLEAR PROTEIN RELATED TO AF4) [Homo sapiens] full insert sequence.
chr1 99603831 99603838 - miR-9 3 5 PEAK352 3UTR EXN28 AK087712 Hisppd1 histidine acid phosphatase domain containing 1
chr1 125230473 125230479 - miR-19 3 3 PEAK380 3UTR EXN26 NM_199021 Dpp10 dipeptidyl peptidase 10
chr1 125329601 125329607 - miR-124 2 2 PEAK381 CDS EXN9 NM_199021 Dpp10 dipeptidyl peptidase 10
chr1 125329573 125329579 - miR-124 2 2 PEAK381 CDS EXN9 NM_199021 Dpp10 dipeptidyl peptidase 10
chr1 99604195 99604201 - miR-193 3 3 PEAK353 3UTR EXN28 AK087712 Hisppd1 histidine acid phosphatase domain containing 1
chr1 99604230 99604236 - miR-181 3 3 PEAK353 3UTR EXN28 AK087712 Hisppd1 histidine acid phosphatase domain containing 1
chr1 99653478 99653486 - miR-153 4 3 PEAK354 CDS EXN4 AK138622 Hisppd1 histidine acid phosphatase domain containing 1
chr1 99653438 99653444 - miR-153 4 3 PEAK354 CDS EXN4 AK138622 Hisppd1 histidine acid phosphatase domain containing 1
chr1 99653444 99653451 - miR-26 4 3 PEAK354 CDS EXN4 AK138622 Hisppd1 histidine acid phosphatase domain containing 1
chr1 174303991 174303997 + miR-19 41 5 PEAK677 3UTR EXN2 NM_001039484 Kcnj10 potassium inwardly-rectifying channel J10
chr1 174304011 174304017 + miR-153 41 5 PEAK677 3UTR EXN2 NM_001039484 Kcnj10 potassium inwardly-rectifying channel J10
chr1 191033201 191033209 - miR-124 14 5 PEAK778 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033373 191033379 - miR-181 3 3 PEAK779 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 191033346 191033352 - miR-221 3 3 PEAK779 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 135972117 135972123 - miR-17 7 3 PEAK442 3UTR EXN2 NM_007570 Btg2 B-cell translocation gene 2 anti-proliferative
chr1 135972130 135972136 - miR-101 7 3 PEAK442 3UTR EXN2 NM_007570 Btg2 B-cell translocation gene 2 anti-proliferative
chr1 135973138 135973145 - miR-9 4 3 PEAK444 3UTR EXN2 NM_007570 Btg2 B-cell translocation gene 2 anti-proliferative
chr1 135973160 135973166 - miR-19 4 3 PEAK444 3UTR EXN2 NM_007570 Btg2 B-cell translocation gene 2 anti-proliferative
chr1 135973421 135973427 - miR-344 4 2 PEAK445 3UTR EXN2 NM_007570 Btg2 B-cell translocation gene 2 anti-proliferative
chr1 135973418 135973424 - miR-125 4 2 PEAK445 3UTR EXN2 NM_007570 Btg2 B-cell translocation gene 2 anti-proliferative
chr1 77377525 77377532 - let-7 8 4 PEAK244 CDS EXN14 NM_007936 Epha4 Eph receptor A4
chr1 99603801 99603807 - miR-181 3 5 PEAK352 3UTR EXN28 AK087712 Hisppd1 histidine acid phosphatase domain containing 1
chr1 77377519 77377525 - miR-193 8 4 PEAK244 CDS EXN14 NM_007936 Epha4 Eph receptor A4
chr1 77370268 77370274 - miR-30 53 5 PEAK242 3UTR EXN17 NM_007936 Epha4 Eph receptor A4
chr1 77370264 77370271 - let-7 53 5 PEAK242 3UTR EXN17 NM_007936 Epha4 Eph receptor A4
chr1 75182910 75182916 - miR-15 3 2 PEAK225 CDS EXN8 NM_001003917 Atg9a autophagy-related 9-like 1
chr1 75184286 75184292 - miR-708 7 3 PEAK226 CDS EXN3 AK043624 Atg9 Mus musculus 10 days neonate cortex cDNA RIKEN full-length enriched library clone:A830013B02 product:hypothetical protein full insert sequence.
chr1 75184304 75184312 - miR-15 7 3 PEAK226 CDS EXN3 AK043624 Atg9 Mus musculus 10 days neonate cortex cDNA RIKEN full-length enriched library clone:A830013B02 product:hypothetical protein full insert sequence.
chr1 77370252 77370259 - miR-17 53 5 PEAK242 3UTR EXN17 NM_007936 Epha4 Eph receptor A4
chr1 77370234 77370240 - miR-17 53 5 PEAK242 3UTR EXN17 NM_007936 Epha4 Eph receptor A4
chr1 191033363 191033369 - miR-181 3 3 PEAK779 3UTR EXN6 AK164197 Kcnk2 Mus musculus adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230101D21 product:potassium channel subfamily K member 2 full insert sequence.
chr1 174302659 174302665 + miR-344 6 5 PEAK676 3UTR EXN2 NM_001039484 Kcnj10 potassium inwardly-rectifying channel J10
chr1 156259230 156259236 - miR-9 10 4 PEAK530 CDS EXN43 NM_009782 Cacna1e calcium channel voltage-dependent R type
chr1 64125605 64125611 - let-7 4 3 PEAK173 CDS EXN3 AK149362 Klf7 Kruppel-like factor 7 (ubiquitous)
chr1 64125621 64125627 - miR-138 4 3 PEAK173 CDS EXN3 AK149362 Klf7 Kruppel-like factor 7 (ubiquitous)
chr1 138110290 138110296 - miR-344 3 2 PEAK465 3UTR EXN10 NM_028872 5730559C18Rik hypothetical protein LOC67313
chr1 138110294 138110302 - miR-124 3 2 PEAK465 3UTR EXN10 NM_028872 5730559C18Rik hypothetical protein LOC67313
chr1 64088960 64088967 - miR-19 3 2 PEAK172 CDS EXN4 AK149362 Klf7 Kruppel-like factor 7 (ubiquitous)
chr1 53970095 53970101 - miR-15 16 3 PEAK124 CDS EXN12 NM_001001883 Hecw2 HECT C2 and WW domain containing E3 ubiquitin
chr1 155311486 155311493 - miR-30 4 3 PEAK506 CDS EXN19 AK141824 Dhx9 DEAH (Asp-Glu-Ala-His) box polypeptide 9
chr1 145494396 145494402 + let-7 20 5 PEAK476 CDS EXN2 NM_020025 B3galt2 UDP-Gal:betaGlcNAc beta
chr1 145493864 145493870 + miR-153 5 3 PEAK473 CDS EXN2 NM_020025 B3galt2 UDP-Gal:betaGlcNAc beta
chr1 165798889 165798895 + miR-27 10 4 PEAK580 CDS EXN10 AK133957 Kifap3 kinesin-associated protein 3
chr1 165778861 165778867 + miR-181 15 4 PEAK579 CDS EXN4 AK133957 Kifap3 kinesin-associated protein 3
chr1 165778865 165778871 + miR-19 15 4 PEAK579 CDS EXN4 AK133957 Kifap3 kinesin-associated protein 3
chr1 165778835 165778841 + miR-21 15 4 PEAK579 CDS EXN4 AK133957 Kifap3 kinesin-associated protein 3
chr1 156243022 156243028 - miR-19 8 4 PEAK528 3UTR EXN47 NM_009782 Cacna1e calcium channel voltage-dependent R type
chr1 156242804 156242810 - miR-193 5 4 PEAK527 3UTR EXN47 NM_009782 Cacna1e calcium channel voltage-dependent R type
chr1 37474633 37474640 - miR-708 14 5 PEAK85 3UTR EXN3 NM_198006 6330578E17Rik hypothetical protein LOC76178
chr1 37474625 37474631 - miR-153 14 5 PEAK85 3UTR EXN3 NM_198006 6330578E17Rik hypothetical protein LOC76178
chr1 64125881 64125888 - let-7 3 3 PEAK174 CDS EXN3 AK149362 Klf7 Kruppel-like factor 7 (ubiquitous)
chr1 64125899 64125905 - miR-124 3 3 PEAK174 CDS EXN3 AK149362 Klf7 Kruppel-like factor 7 (ubiquitous)
chr1 53970080 53970086 - miR-27 16 3 PEAK124 CDS EXN12-ITN13 NM_001001883 Hecw2 HECT C2 and WW domain containing E3 ubiquitin
chr1 55129107 55129114 + miR-27 3 2 PEAK134 3UTR EXN5 NM_001039710 Coq10b coenzyme Q10 homolog B isoform 1
Page 1 of 157 Showing rows 1 - 100 (15663 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table