The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm8)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 7 of 157 Showing rows 601 - 700 (15664 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr3 67546175 67546181 - miR-9 2 2 PEAK1924 CDS EXN6 NM_016753 Lxn latexin
chr3 55872564 55872571 + miR-30 2 3 PEAK1893 3UTR EXN1 NM_010750 Mab21l1 mab-21-like 1
chr4 122874186 122874193 - miR-708 2 2 PEAK2778 CDS EXN83 AF150755 AF150755 Microtubule-actin crosslinking factor 1 (Actin cross-linking family 7).
chr4 122995060 122995066 - miR-153 2 2 PEAK2819 CDS EXN26 AF150755 AF150755 Microtubule-actin crosslinking factor 1 (Actin cross-linking family 7).
chr5 140341283 140341290 - miR-9 2 2 PEAK3657 CDS EXN16 BC010702 Mad1l1 Mitotic spindle assembly checkpoint protein MAD1 (Mitotic arrest deficient-like protein 1) (MAD1-like 1).
chr5 140341246 140341252 - miR-193 2 2 PEAK3657 CDS EXN16 BC010702 Mad1l1 Mitotic spindle assembly checkpoint protein MAD1 (Mitotic arrest deficient-like protein 1) (MAD1-like 1).
chr5 140341265 140341271 - miR-124 2 2 PEAK3657 CDS EXN16 BC010702 Mad1l1 Mitotic spindle assembly checkpoint protein MAD1 (Mitotic arrest deficient-like protein 1) (MAD1-like 1).
chr13 112868534 112868542 - miR-19 2 2 PEAK8891 3UTR ITN21 NM_011945 Map3k1 mitogen activated protein kinase kinase kinase
chr13 112868557 112868563 - miR-30 2 2 PEAK8891 3UTR ITN21 NM_011945 Map3k1 mitogen activated protein kinase kinase kinase
chr13 112877521 112877527 - miR-101 2 2 PEAK8895 CDS EXN13 NM_011945 Map3k1 mitogen activated protein kinase kinase kinase
chr9 75172877 75172883 - miR-101 2 2 PEAK5883 3UTR EXN6 NM_027418 Mapk6 mitogen-activated protein kinase 6
chr9 75172908 75172914 - miR-21 2 2 PEAK5883 3UTR EXN6 NM_027418 Mapk6 mitogen-activated protein kinase 6
chr17 24626802 24626808 - miR-193 2 2 PEAK10310 CDS EXN31 AB043125 Mapk8ip3 C-jun-amino-terminal kinase interacting protein 3 (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen- activated protein kinase 8-interacting protein 3) (JNK/SAPK-associated protein 1) (JSAP1) (Sunday driver 2).
chr1 132881342 132881349 - miR-708 2 2 PEAK400 3UTR EXN10 NM_008551 Mapkapk2 MAP kinase-activated protein kinase 2
chr5 121797758 121797764 - miR-30 2 2 PEAK3526 CDS EXN5 NM_010765 Mapkapk5 MAP kinase-activated protein kinase 5
chr5 121797761 121797768 - miR-17 2 2 PEAK3526 CDS EXN5 NM_010765 Mapkapk5 MAP kinase-activated protein kinase 5
chr6 72365529 72365535 - miR-27 2 2 PEAK4015 CDS EXN6 AK133960 Mat2a 8 days embryo whole body cDNA RIKEN full-length enriched library clone:5730572I16 product:methionine adenosyltransferase II alpha full insert sequence.
chr6 72365517 72365524 - miR-153 2 2 PEAK4015 CDS EXN6 AK133960 Mat2a 8 days embryo whole body cDNA RIKEN full-length enriched library clone:5730572I16 product:methionine adenosyltransferase II alpha full insert sequence.
chr6 72365544 72365550 - miR-19 2 2 PEAK4015 CDS ITN6 AK133960 Mat2a 8 days embryo whole body cDNA RIKEN full-length enriched library clone:5730572I16 product:methionine adenosyltransferase II alpha full insert sequence.
chrX 152911237 152911244 - miR-19 2 2 PEAK6503 3UTR EXN6 NM_178266 Mbtps2 membrane-bound transcription factor protease
chr12 67607952 67607958 - miR-34 2 2 PEAK8256 CDS EXN6 AK137667 Mamdc1 MAM domain containing protein 1 precursor (MAM domain-containing glycosylphosphatidylinositol anchor protein 2).
chr12 67607976 67607982 - miR-181 2 2 PEAK8256 CDS EXN6 AK137667 Mamdc1 MAM domain containing protein 1 precursor (MAM domain-containing glycosylphosphatidylinositol anchor protein 2).
chr1 134828902 134828908 - miR-124 2 2 PEAK427 CDS EXN8 BC003750 Mdm4 Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like p53-binding protein) (Mdmx protein) (Double minute 4 protein).
chr1 134840222 134840228 - miR-19 2 2 PEAK429 CDS EXN3 BC003750 Mdm4 Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like p53-binding protein) (Mdmx protein) (Double minute 4 protein).
chr9 86378734 86378740 - miR-221 2 2 PEAK5951 3UTR EXN14 AK163403 Mod1 2 cells egg cDNA RIKEN full-length enriched library clone:B020035D20 product:malic enzyme supernatant full insert sequence.
chr9 86474958 86474966 - miR-30 2 2 PEAK5954 CDS EXN3 BC011081 Mod1 Mod1 protein.
chrX 11906161 11906167 - miR-101 2 2 PEAK6214 CDS EXN4 AB019028 Crsp2 Mus musculus.
chr11 98522502 98522508 - miR-708 2 2 PEAK7890 CDS EXN24 NM_011869 Thrap4 thyroid hormone receptor associated protein 4
chr10 93309358 93309364 - miR-27 2 2 PEAK6966 CDS EXN4 AK147097 Metap2 Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2) (Peptidase M 2) (Initiation factor 2-associated 67 kDa glycoprotein) (p67) (p67eIF2).
chr10 93309372 93309378 - miR-9 2 2 PEAK6966 CDS EXN4 AK147097 Metap2 Methionine aminopeptidase 2 (EC 3.4.11.18) (MetAP 2) (Peptidase M 2) (Initiation factor 2-associated 67 kDa glycoprotein) (p67) (p67eIF2).
chr10 126448369 126448376 + miR-124 2 2 PEAK7074 CDS EXN6 NM_010792 Mettl1 methyltransferase-like 1
chr1 52653603 52653609 - miR-344 2 2 PEAK120 CDS EXN2 AK035995 2210010L05Rik 10 days neonate medulla oblongata cDNA RIKEN full-length enriched library clone:B830038L24 product:hypothetical protein full insert sequence.
chr3 40915359 40915365 - miR-181 2 2 PEAK1861 3UTR EXN12 NM_028140 2810423E13Rik hypothetical protein LOC72175
chr3 40915371 40915377 - miR-27 2 2 PEAK1861 3UTR EXN12 NM_028140 2810423E13Rik hypothetical protein LOC72175
chr6 136836743 136836750 - miR-708 2 2 PEAK4329 3UTR EXN4 NM_008597 Mgp matrix Gla protein
chr6 136836711 136836717 - miR-708 2 2 PEAK4329 3UTR EXN4 NM_008597 Mgp matrix Gla protein
chr6 120996719 120996725 - miR-15 2 2 PEAK4235 CDS EXN10 NM_153396 Mical3 microtubule associated monoxygenase calponin
chr6 120996739 120996745 - miR-125 2 2 PEAK4235 CDS ITN10-EXN10 NM_153396 Mical3 microtubule associated monoxygenase calponin
chr11 115424049 115424055 - miR-138 2 2 PEAK8025 3UTR EXN5 BC055812 Mif4gd 18-day embryo whole body cDNA RIKEN full-length enriched library clone:1110014L05 product:hypothetical ARM repeat structure containing protein full insert sequence.
chr11 115424056 115424062 - miR-34 2 2 PEAK8025 3UTR EXN5 BC055812 Mif4gd 18-day embryo whole body cDNA RIKEN full-length enriched library clone:1110014L05 product:hypothetical ARM repeat structure containing protein full insert sequence.
chr10 80069443 80069450 - miR-125 2 2 PEAK6875 3UTR EXN14 AK154235 Mknk2 MAP kinase-interacting serine/threonine-protein kinase 2 (EC 2.7.1.37) (MAP kinase signal-integrating kinase 2) (Mnk2).
chr18 6936853 6936859 - miR-193 2 2 PEAK10691 3UTR EXN7 NM_177595 Irxl1 hypothetical protein LOC210719
chr18 6936880 6936886 - miR-34 2 2 PEAK10691 CDS EXN7 NM_177595 Irxl1 hypothetical protein LOC210719
chr4 35272761 35272767 - let-7 2 2 PEAK2429 CDS EXN2 NM_178061 Mobkl2b Mob3b protein
chr4 35272798 35272804 - miR-125 2 2 PEAK2429 CDS EXN2 NM_178061 Mobkl2b Mob3b protein
chr4 35273113 35273120 - miR-124 2 2 PEAK2430 5UTR EXN2 NM_178061 Mobkl2b Mob3b protein
chr4 35273126 35273132 - miR-9 2 2 PEAK2430 5UTR EXN2 NM_178061 Mobkl2b Mob3b protein
chr4 35273141 35273147 - miR-27 2 2 PEAK2430 5UTR EXN2 NM_178061 Mobkl2b Mob3b protein
chr8 120678181 120678187 - miR-181 2 2 PEAK5409 CDS EXN5 NM_026758 Mphosph6 M phase phosphoprotein 6
chr11 101841565 101841571 - miR-34 2 2 PEAK7920 CDS EXN3 BC062642 Mpp3 Membrane associated guanylate kinase-like protein (Mpp3 protein).
chr11 101841528 101841534 - miR-125 2 2 PEAK7920 CDS EXN3 BC062642 Mpp3 Membrane associated guanylate kinase-like protein (Mpp3 protein).
chr11 101841548 101841554 - miR-125 2 2 PEAK7920 CDS EXN3 BC062642 Mpp3 Membrane associated guanylate kinase-like protein (Mpp3 protein).
chr5 37083644 37083650 - miR-124 2 2 PEAK3227 3UTR EXN2 NM_026242 Mrfap1 protein associated with MRG 14 kDa
chr14 56782278 56782284 + miR-19 2 2 PEAK9146 3UTR EXN2 NM_026401 Mrp63 mitochondrial ribosomal protein 63
chr11 57989302 57989309 + miR-30 2 2 PEAK7427 CDS EXN3 NM_175001 Mrpl22 mitochondrial ribosomal protein L22
chr11 57989311 57989317 + let-7 2 2 PEAK7427 CDS EXN3 NM_175001 Mrpl22 mitochondrial ribosomal protein L22
chr11 57989317 57989323 + miR-34 2 2 PEAK7427 CDS EXN3 NM_175001 Mrpl22 mitochondrial ribosomal protein L22
chr11 57989338 57989344 + miR-138 2 2 PEAK7427 CDS EXN3 NM_175001 Mrpl22 mitochondrial ribosomal protein L22
chr1 162033662 162033668 + miR-221 2 2 PEAK559 CDS EXN2 NM_025474 Mrps14 mitochondrial ribosomal protein S14
chr1 162033674 162033681 + miR-181 2 2 PEAK559 CDS EXN2 NM_025474 Mrps14 mitochondrial ribosomal protein S14
chr4 138619598 138619604 - miR-9 2 2 PEAK2947 3UTR EXN8 NM_023536 2610012O22Rik muscle protein684
chr10 120185132 120185138 - miR-9 2 2 PEAK7048 3UTR EXN7 NM_177092 Msrb3 methionine-R-sulfoxide reductase B3
chr10 120187027 120187033 - miR-21 2 2 PEAK7049 3UTR EXN7 NM_177092 Msrb3 methionine-R-sulfoxide reductase B3
chr10 120186998 120187004 - miR-181 2 2 PEAK7049 3UTR EXN7 NM_177092 Msrb3 methionine-R-sulfoxide reductase B3
chr10 120187007 120187014 - miR-15 2 2 PEAK7049 3UTR EXN7 NM_177092 Msrb3 methionine-R-sulfoxide reductase B3
chr3 89295017 89295025 - miR-30 2 2 PEAK2011 3UTR EXN8 NM_013604 Mtx1 metaxin 1
chr14 102040570 102040576 - let-7 2 2 PEAK9282 CDS EXN59 NM_207215 Phr1 pam highwire rpm 1
chr14 102040578 102040584 - miR-17 2 2 PEAK9282 CDS EXN59 NM_207215 Phr1 pam highwire rpm 1
chr14 102040605 102040611 - miR-27 2 2 PEAK9282 CDS EXN59 NM_207215 Phr1 pam highwire rpm 1
chr4 94467274 94467280 - miR-344 2 2 PEAK2654 CDS EXN2 AK081684 Mysm1 16 days embryo head cDNA RIKEN full-length enriched library clone:C130067A03 product:hypothetical Myb DNA binding domain/Myc-type helix-loop-helix dimerization domain containing protein full insert sequence.
chr5 150911573 150911579 - miR-9 2 2 PEAK3774
chr2 25879965 25879971 - miR-101 2 2 PEAK914 3UTR EXN6 NM_001037098 Btbd14a BTB (POZ) domain containing 14A isoform 2
chr14 122506759 122506767 - miR-9 2 2 PEAK9348
chrX 118513253 118513260 - miR-9 2 2 PEAK6433 CDS EXN1 NM_138742 Nap1l3 nucleosome assembly protein 1-like 3
chr2 148388583 148388589 - miR-125 2 2 PEAK1582 3UTR EXN11 NM_019632 Napb N-ethylmaleimide sensitive fusion protein
chr2 148388616 148388623 - miR-34 2 2 PEAK1582 3UTR EXN11 NM_019632 Napb N-ethylmaleimide sensitive fusion protein
chr2 148388619 148388625 - miR-101 2 2 PEAK1582 3UTR EXN11 NM_019632 Napb N-ethylmaleimide sensitive fusion protein
chr1 137260078 137260084 - miR-9 2 2 PEAK456 CDS EXN28 NM_173437 Nav1 neuron navigator 1
chr4 138354484 138354490 - miR-138 2 2 PEAK2942 3UTR EXN4 NM_008675 Nbl1 neuroblastoma suppression of tumorigenicity 1
chr8 73023052 73023058 - miR-26 2 3 PEAK5183 3UTR EXN15 NM_007789 Cspg3 chondroitin sulfate proteoglycan 3
chr8 73045609 73045616 - miR-15 2 2 PEAK5201 CDS EXN2 NM_007789 Cspg3 chondroitin sulfate proteoglycan 3
chr8 73045600 73045606 - miR-15 2 2 PEAK5201 CDS EXN2 NM_007789 Cspg3 chondroitin sulfate proteoglycan 3
chr8 73045621 73045627 - miR-125 2 2 PEAK5201 CDS EXN2 NM_007789 Cspg3 chondroitin sulfate proteoglycan 3
chr12 4303517 4303523 - miR-30 2 2 PEAK8114 CDS EXN12 NM_010881 Ncoa1 nuclear receptor coactivator 1
chr12 4303506 4303512 - miR-181 2 2 PEAK8114 CDS EXN12 NM_010881 Ncoa1 nuclear receptor coactivator 1
chr2 155099402 155099408 - miR-21 2 2 PEAK1639 CDS EXN9 NM_019825 Ncoa6 nuclear receptor coactivator 6
chr5 125314426 125314432 - miR-138 2 2 PEAK3584 CDS EXN36 AF113002 Ncor2 Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid- retinoic-acid-receptor-associated corepressor) (T3 receptor- associating factor) (TRAC).
chr5 125314447 125314453 - miR-34 2 2 PEAK3584 CDS EXN36 AF113002 Ncor2 Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid- retinoic-acid-receptor-associated corepressor) (T3 receptor- associating factor) (TRAC).
chr17 24449688 24449694 - miR-15 2 2 PEAK10306 3UTR EXN4 NM_026684 Ndufb10 NADH dehydrogenase (ubiquinone) 1 beta
chr17 24449690 24449696 - miR-34 2 2 PEAK10306 3UTR EXN4 NM_026684 Ndufb10 NADH dehydrogenase (ubiquinone) 1 beta
chr13 115437798 115437804 - miR-9 2 2 PEAK8908 CDS EXN3 NM_010887 Ndufs4 NADH dehydrogenase (ubiquinone) Fe-S protein 4
chr1 140349222 140349229 - miR-153 2 2 PEAK469 CDS EXN5 AK078639 Nek7 Adult male adrenal gland cDNA RIKEN full-length enriched library clone:7330417M05 product:NIMA (never in mitosis gene a)-related expressed kinase 7 full insert sequence.
chr12 86200488 86200494 - miR-30 2 2 PEAK8365 CDS EXN15 NM_145138 Nek9 NIMA-related expressed kinase 9
chr12 86200446 86200453 - miR-15 2 2 PEAK8365 CDS EXN15 NM_145138 Nek9 NIMA-related expressed kinase 9
chr9 58715088 58715094 - miR-21 2 2 PEAK5741 CDS ITN14 BC054540 Neo1 Neo1 protein.
chr9 58715080 58715086 - miR-19 2 2 PEAK5741 CDS ITN14 BC054540 Neo1 Neo1 protein.
chr9 58715085 58715091 - miR-15 2 2 PEAK5741 CDS ITN14 BC054540 Neo1 Neo1 protein.
chr8 88529664 88529670 - miR-30 2 2 PEAK5291 3UTR EXN9 AK083512 AK083512 Neuropilin and tolloid-like protein 2 precursor (Brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 2).
chr8 88529676 88529682 - miR-27 2 2 PEAK5291 3UTR EXN9 AK083512 AK083512 Neuropilin and tolloid-like protein 2 precursor (Brain-specific transmembrane protein containing 2 CUB and 1 LDL-receptor class A domains protein 2).
chr6 55608000 55608007 - miR-27 2 2 PEAK3958 3UTR EXN2 NM_009717 Neurod6 neurogenic differentiation 6
Page 7 of 157 Showing rows 601 - 700 (15664 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table