The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm8)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 3 of 157 Showing rows 201 - 300 (15664 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr5 121393997 121394003 - miR-17 2 2 PEAK3521 3UTR EXN16 NM_011202 Ptpn11 protein tyrosine phosphatase non-receptor type
chr5 121394128 121394134 - miR-34 2 2 PEAK3522 3UTR EXN16 NM_011202 Ptpn11 protein tyrosine phosphatase non-receptor type
chr5 121394147 121394153 - miR-17 2 2 PEAK3522 3UTR EXN16 NM_011202 Ptpn11 protein tyrosine phosphatase non-receptor type
chr5 20509677 20509683 - miR-19 2 2 PEAK3136 CDS EXN13 NM_011203 Ptpn12 protein tyrosine phosphatase non-receptor type
chr5 20509697 20509703 - miR-193 2 2 PEAK3136 CDS EXN13 NM_011203 Ptpn12 protein tyrosine phosphatase non-receptor type
chr5 20509699 20509705 - miR-34 2 2 PEAK3136 CDS EXN13 NM_011203 Ptpn12 protein tyrosine phosphatase non-receptor type
chr1 191571888 191571895 + miR-221 4 2 PEAK780
chr12 99116091 99116097 - miR-138 2 2 PEAK8403 CDS EXN3 AK013777 Ptpn21 Adult male pituitary gland cDNA RIKEN full-length enriched library clone:5330414M15 product:protein tyrosine phosphatase non-receptor type 21 full insert sequence.
chr12 99116104 99116111 - miR-124 2 2 PEAK8403 CDS EXN3 AK013777 Ptpn21 Adult male pituitary gland cDNA RIKEN full-length enriched library clone:5330414M15 product:protein tyrosine phosphatase non-receptor type 21 full insert sequence.
chr1 121486587 121486594 - miR-101 2 2 PEAK372
chr7 46946608 46946614 - miR-193 2 2 PEAK4588 3UTR EXN14 NM_013643 Ptpn5 protein tyrosine phosphatase non-receptor type
chr7 46946618 46946624 - miR-181 2 2 PEAK4588 3UTR EXN14 NM_013643 Ptpn5 protein tyrosine phosphatase non-receptor type
chr7 46947341 46947348 - miR-138 4 2 PEAK4589 CDS EXN13 NM_013643 Ptpn5 protein tyrosine phosphatase non-receptor type
chr7 46947330 46947336 - miR-34 4 2 PEAK4589 CDS EXN13 NM_013643 Ptpn5 protein tyrosine phosphatase non-receptor type
chr7 46947332 46947338 - miR-15 4 2 PEAK4589 CDS EXN13 NM_013643 Ptpn5 protein tyrosine phosphatase non-receptor type
chr4 75555649 75555655 - miR-34 3 2 PEAK2603 CDS EXN5 AK138585 Ptprd Adult male spinal cord cDNA RIKEN full-length enriched library clone:A330069J20 product:protein tyrosine phosphatase receptor type D full insert sequence.
chr4 75555620 75555626 - miR-124 3 2 PEAK2603 CDS EXN5 AK138585 Ptprd Adult male spinal cord cDNA RIKEN full-length enriched library clone:A330069J20 product:protein tyrosine phosphatase receptor type D full insert sequence.
chr4 75555654 75555660 - miR-9 3 2 PEAK2603 CDS EXN5 AK138585 Ptprd Adult male spinal cord cDNA RIKEN full-length enriched library clone:A330069J20 product:protein tyrosine phosphatase receptor type D full insert sequence.
chr4 117707807 117707814 - miR-138 2 2 PEAK2753 CDS EXN31 NM_011213 Ptprf protein tyrosine phosphatase receptor type F
chr4 117707779 117707785 - let-7 2 2 PEAK2753 CDS EXN31 NM_011213 Ptprf protein tyrosine phosphatase receptor type F
chr12 117342985 117342991 + miR-138 7 2 PEAK8507 CDS EXN11 NM_011215 Ptprn2 protein tyrosine phosphatase receptor type N
chr12 117343031 117343037 + miR-34 7 2 PEAK8507 CDS EXN11 NM_011215 Ptprn2 protein tyrosine phosphatase receptor type N
chr10 115641394 115641402 + miR-27 3 2 PEAK7031 CDS EXN7 AF041866 Ptprr Protein-tyrosine-phosphatase-gamma-37 (EC 3.1.3.48) (Protein-tyrosine- phosphate-gamma-37).
chr10 115641398 115641404 + miR-181 3 2 PEAK7031 CDS EXN7 AF041866 Ptprr Protein-tyrosine-phosphatase-gamma-37 (EC 3.1.3.48) (Protein-tyrosine- phosphate-gamma-37).
chr17 56069748 56069754 - miR-9 5 2 PEAK10494 CDS EXN7 X82288 Ptprs Protein-tyrosine-phosphatase precursor (EC 3.1.3.48).
chr17 56069752 56069758 - miR-344 5 2 PEAK10494 CDS EXN7 X82288 Ptprs Protein-tyrosine-phosphatase precursor (EC 3.1.3.48).
chr2 161220960 161220968 - miR-708 2 2 PEAK1689 CDS EXN31 AY026862 Ptprt Receptor protein tyrosine phosphatase-rho (Fragment).
chr2 161220964 161220970 - miR-21 2 2 PEAK1689 CDS EXN31 AY026862 Ptprt Receptor protein tyrosine phosphatase-rho (Fragment).
chr2 161221009 161221015 - miR-125 2 2 PEAK1689 CDS ITN31-EXN31 AY026862 Ptprt Receptor protein tyrosine phosphatase-rho (Fragment).
chr16 46367525 46367531 - miR-15 3 2 PEAK10038 3UTR EXN6 NM_021495 Pvrl3 poliovirus receptor-related 3 isoform alpha
chr16 46367516 46367522 - miR-101 3 2 PEAK10038 3UTR EXN6 NM_021495 Pvrl3 poliovirus receptor-related 3 isoform alpha
chr16 46367527 46367533 - miR-34 3 2 PEAK10038 3UTR EXN6 NM_021495 Pvrl3 poliovirus receptor-related 3 isoform alpha
chr16 46383210 46383217 - miR-153 2 2 PEAK10041 CDS EXN2 NM_021495 Pvrl3 poliovirus receptor-related 3 isoform alpha
chr2 26042660 26042667 - miR-125 4 2 PEAK916 CDS EXN8 NM_153559 Qscn6l1 quiescin Q6-like 1
chr2 26042675 26042681 - miR-193 4 2 PEAK916 CDS EXN8 NM_153559 Qscn6l1 quiescin Q6-like 1
chr12 3248050 3248056 - miR-26 5 2 PEAK8107 3UTR EXN6 NM_016676 Rab10 RAB10 member RAS oncogene family
chr12 3248034 3248041 - miR-30 5 2 PEAK8107 3UTR EXN6 NM_016676 Rab10 RAB10 member RAS oncogene family
chr17 33353581 33353588 - miR-17 3 2 PEAK10368 3UTR EXN5 NM_008997 Rab11b RAB11B member RAS oncogene family
chr12 77717135 77717141 - miR-27 3 2 PEAK8320 3UTR EXN7 NM_134050 Rab15 RAB15 member RAS oncogene family
chr7 100513642 100513648 + miR-17 3 2 PEAK4730 3UTR EXN8 BC019118 Rab6 2 days neonate thymus thymic cells cDNA RIKEN full-length enriched library clone:E430022E15 product:RAB6 member RAS oncogene family full insert sequence.
chr2 37339566 37339572 + miR-101 3 2 PEAK1036 CDS EXN2 NM_177383 Gpr21 G protein-coupled receptor 21
chr2 37339612 37339618 + miR-27 3 2 PEAK1036 CDS EXN2 NM_177383 Gpr21 G protein-coupled receptor 21
chr1 162059757 162059763 - miR-221 2 2 PEAK562 3UTR EXN9 NM_001038621 Rabgap1l RAB GTPase activating protein 1-like isoform b
chr1 162560759 162560766 - miR-30 3 2 PEAK563 CDS EXN6 AF118565 Rabgap1l Hhl.
chr5 143761282 143761288 - miR-15 4 2 PEAK3701 3UTR EXN7 AK166383 Rac1 Ras-related C3 botulinum toxin substrate 1 (p21-Rac1).
chr5 143762359 143762365 - miR-124 4 2 PEAK3707 3UTR EXN7 AK166383 Rac1 Ras-related C3 botulinum toxin substrate 1 (p21-Rac1).
chr15 51800025 51800031 - miR-138 3 2 PEAK9491 CDS EXN9 NM_009009 Rad21 RAD21 homolog
chr6 115610028 115610034 - miR-27 2 2 PEAK4188 CDS EXN2 NM_029780 Raf1 protein kinase raf 1
chr6 115610039 115610045 - miR-21 2 2 PEAK4188 CDS EXN2 NM_029780 Raf1 protein kinase raf 1
chr13 17666046 17666052 - miR-101 3 2 PEAK8546 3UTR EXN5 NM_019491 Rala ras related v-ral simian leukemia viral oncogene
chr1 158645505 158645511 - miR-19 4 2 PEAK556 3UTR EXN19 BC043132 Ralgps2 17 days pregnant adult female amnion cDNA RIKEN full-length enriched library clone:I920192N22 product:RAL-A exchange factor RALGPS2 homolog.
chr1 158645490 158645496 - miR-17 4 2 PEAK556 3UTR EXN19 BC043132 Ralgps2 17 days pregnant adult female amnion cDNA RIKEN full-length enriched library clone:I920192N22 product:RAL-A exchange factor RALGPS2 homolog.
chr1 158645513 158645520 - miR-221 4 2 PEAK556 3UTR EXN19 BC043132 Ralgps2 17 days pregnant adult female amnion cDNA RIKEN full-length enriched library clone:I920192N22 product:RAL-A exchange factor RALGPS2 homolog.
chr10 57866001 57866007 + miR-21 5 2 PEAK6709 CDS EXN18 NM_011240 Ranbp2 RAN binding protein 2
chr10 57866048 57866054 + miR-124 5 2 PEAK6709 CDS EXN18 NM_011240 Ranbp2 RAN binding protein 2
chr19 29874445 29874451 - miR-9 2 2 PEAK11304 3UTR EXN1 NM_177721 Ranbp6 RAN binding protein 6
chr19 29874461 29874467 - miR-27 2 2 PEAK11304 3UTR EXN1 NM_177721 Ranbp6 RAN binding protein 6
chr19 29874462 29874469 - miR-101 2 2 PEAK11304 3UTR EXN1 NM_177721 Ranbp6 RAN binding protein 6
chr19 29874497 29874503 - miR-181 2 2 PEAK11304 3UTR EXN1 NM_177721 Ranbp6 RAN binding protein 6
chr13 43427352 43427358 - miR-101 2 2 PEAK8604 CDS EXN11 NM_019930 Ranbp9 RAN binding protein 9
chr13 43427360 43427366 - miR-138 2 2 PEAK8604 CDS EXN11 NM_019930 Ranbp9 RAN binding protein 9
chr13 43427368 43427376 - miR-138 2 2 PEAK8604 CDS EXN11 NM_019930 Ranbp9 RAN binding protein 9
chr10 117218660 117218666 - miR-21 3 2 PEAK7044 3UTR EXN8 NM_024457 Rap1b RAS related protein 1b
chr9 96350792 96350798 - miR-181 4 2 PEAK5987
chr9 96350822 96350828 - miR-30 4 2 PEAK5987
chr9 96375374 96375380 - let-7 2 2 PEAK5988 CDS EXN15 NM_053268 Rasa2 RAS p21 protein activator 2
chr9 96375351 96375357 - miR-708 2 2 PEAK5988 CDS ITN16 NM_053268 Rasa2 RAS p21 protein activator 2
chr9 96375395 96375401 - let-7 2 2 PEAK5988 CDS EXN15 NM_053268 Rasa2 RAS p21 protein activator 2
chr2 116972378 116972384 - miR-30 3 2 PEAK1356 3UTR EXN17 NM_011246 Rasgrp1 RAS guanyl releasing protein 1
chr10 120813602 120813608 - miR-181 2 2 PEAK7051 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120813561 120813567 - miR-125 2 2 PEAK7051 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120813589 120813595 - miR-125 2 2 PEAK7051 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120814096 120814102 - miR-124 2 2 PEAK7052 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120814080 120814086 - miR-101 2 2 PEAK7052 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120814103 120814110 - miR-125 2 2 PEAK7052 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120814116 120814122 - miR-124 2 2 PEAK7052 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120814377 120814384 - miR-124 3 2 PEAK7053 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr10 120814767 120814773 - miR-125 3 2 PEAK7054 3UTR EXN5 NM_138956 Rassf3 Ras association (RalGDS/AF-6) domain family 3
chr6 145774544 145774550 + miR-153 3 2 PEAK4355 3UTR EXN4 NM_027760 Rassf8 Ras association (RalGDS/AF-6) domain family 8
chr6 145774726 145774732 + miR-27 2 2 PEAK4356 3UTR EXN4 NM_027760 Rassf8 Ras association (RalGDS/AF-6) domain family 8
chr4 128820807 128820813 - let-7 2 2 PEAK2870 CDS EXN9 NM_009030 Rbbp4 retinoblastoma binding protein 4
chr14 104000727 104000733 - let-7 4 2 PEAK9301 3UTR EXN8 BC029079 1700009P03Rik 1700009P03Rik protein.
chr14 104000694 104000700 - miR-19 4 2 PEAK9301 3UTR EXN8 BC029079 1700009P03Rik 1700009P03Rik protein.
chr14 104045593 104045600 - let-7 5 2 PEAK9306 5UTR EXN2 AK049083 1700009P03Rik 0 day neonate cerebellum cDNA RIKEN full-length enriched library clone:C230097K14 product:CTCL TUMOR ANTIGEN SE70-2 (CUTANEOUS T-CELL LYMPHOMA TUMOR ANTIGEN SE70-2) homolog.
chr14 104045605 104045611 - miR-9 5 2 PEAK9306 5UTR EXN2 AK049083 1700009P03Rik 0 day neonate cerebellum cDNA RIKEN full-length enriched library clone:C230097K14 product:CTCL TUMOR ANTIGEN SE70-2 (CUTANEOUS T-CELL LYMPHOMA TUMOR ANTIGEN SE70-2) homolog.
chr14 104045613 104045620 - miR-27 5 2 PEAK9306 5UTR EXN2 AK049083 1700009P03Rik 0 day neonate cerebellum cDNA RIKEN full-length enriched library clone:C230097K14 product:CTCL TUMOR ANTIGEN SE70-2 (CUTANEOUS T-CELL LYMPHOMA TUMOR ANTIGEN SE70-2) homolog.
chr2 76184295 76184301 + miR-9 4 2 PEAK1214 3UTR EXN10 NM_153405 Drbp1 developmentally regulated RNA binding protein 1
chr5 53941897 53941904 + miR-26 2 2 PEAK3260 3UTR EXN11 BC051387 Rbpsuh Bone marrow macrophage cDNA RIKEN full-length enriched library clone:I830125M06 product:recombining binding protein suppressor of hairless (Drosophila) full insert sequence.
chr5 53941900 53941906 + miR-181 2 2 PEAK3260 3UTR EXN11 BC051387 Rbpsuh Bone marrow macrophage cDNA RIKEN full-length enriched library clone:I830125M06 product:recombining binding protein suppressor of hairless (Drosophila) full insert sequence.
chr5 53944379 53944385 + miR-27 2 2 PEAK3266
chr4 134688345 134688351 - miR-138 4 2 PEAK2921 3UTR EXN4 NM_022980 Dscr1l2 Down syndrome critical region gene 1-like 2
chr4 134688309 134688316 - miR-17 4 2 PEAK2921 3UTR EXN4 NM_022980 Dscr1l2 Down syndrome critical region gene 1-like 2
chr4 134688347 134688353 - miR-193 4 2 PEAK2921 3UTR EXN4 NM_022980 Dscr1l2 Down syndrome critical region gene 1-like 2
chr12 80094627 80094633 - miR-26 2 2 PEAK8334 3UTR EXN7 AB030504 Rdh11 UBE-1c1.
chr12 80094652 80094659 - miR-708 2 2 PEAK8334 3UTR EXN7 AB030504 Rdh11 UBE-1c1.
chr12 80094630 80094636 - miR-708 2 2 PEAK8334 3UTR EXN7 AB030504 Rdh11 UBE-1c1.
chr6 71739946 71739953 + miR-19 4 2 PEAK4005 3UTR EXN7 NM_178608 Reep1 receptor expression enhancing protein 1
chr6 71739933 71739939 + miR-193 4 2 PEAK4005 3UTR EXN7 NM_178608 Reep1 receptor expression enhancing protein 1
chr14 69283632 69283640 + miR-138 2 2 PEAK9208 3UTR EXN8 NM_180588 2700029E10Rik receptor expression enhancing protein 4
chr14 69283597 69283603 + let-7 2 2 PEAK9208 3UTR EXN8 NM_180588 2700029E10Rik receptor expression enhancing protein 4
Page 3 of 157 Showing rows 201 - 300 (15664 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table