The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm8)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 2 of 157 Showing rows 101 - 200 (15664 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chr1 9612317 9612323 + miR-124 7 5 PEAK14 3UTR EXN6 NM_178399 3110035E14Rik hypothetical protein LOC76982
chr3 41031985 41031991 + miR-30 4 3 PEAK1862 3UTR EXN13 BC051081 3110057O12Rik Adult male thymus cDNA RIKEN full-length enriched library clone:5832415I18 product:hypothetical protein full insert sequence.
chr3 41032497 41032503 + miR-17 4 3 PEAK1863 3UTR EXN13 BC051081 3110057O12Rik Adult male thymus cDNA RIKEN full-length enriched library clone:5832415I18 product:hypothetical protein full insert sequence.
chr4 115264387 115264393 + miR-9 8 3 PEAK2735 CDS EXN10 NM_172698 4732418C07Rik hypothetical protein LOC230648
chr3 117663959 117663965 + miR-125 6 2 PEAK2205 CDS EXN5 NM_029425 4833424O15Rik phosphatidic acid phosphatase type 2d
chr17 21697602 21697609 + miR-181 3 2 PEAK10269 CDS EXN4 NM_001025373 4930432O21Rik hypothetical protein LOC74670
chr17 21697620 21697626 + miR-101 3 2 PEAK10269 CDS EXN4 NM_001025373 4930432O21Rik hypothetical protein LOC74670
chr17 21697606 21697612 + miR-27 3 2 PEAK10269 CDS EXN4 NM_001025373 4930432O21Rik hypothetical protein LOC74670
chr4 43711313 43711319 + miR-15 2 2 PEAK2471
chr4 43713208 43713216 + miR-124 2 2 PEAK2475
chr4 43713333 43713339 + miR-221 3 2 PEAK2476
chr4 43713321 43713327 + miR-101 3 2 PEAK2476
chr4 43713347 43713353 + miR-193 3 2 PEAK2476
chr15 74551396 74551402 + miR-138 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551384 74551392 + miR-125 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551394 74551400 + miR-193 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551399 74551405 + miR-15 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551403 74551409 + miR-26 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551407 74551413 + miR-21 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551421 74551427 + miR-708 4 3 PEAK9578 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551541 74551548 + miR-15 3 3 PEAK9579 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551545 74551551 + miR-153 3 3 PEAK9579 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr15 74551552 74551559 + miR-124 3 3 PEAK9579 3UTR EXN2 NM_198607 4930572J05Rik mesenchymal stem cell protein DSCD75 homolog
chr8 47692081 47692088 + miR-101 3 2 PEAK5074 3UTR EXN4 NM_025747 4933411K20Rik hypothetical protein LOC66756
chr8 47692083 47692089 + miR-27 3 2 PEAK5074 3UTR EXN4 NM_025747 4933411K20Rik hypothetical protein LOC66756
chr3 106863955 106863962 + miR-125 2 2 PEAK2148 3UTR EXN4 NM_001039488 4933421E11Rik receptor-interacting factor 1 isoform 1
chr12 81797004 81797012 + miR-124 6 3 PEAK8348 3UTR EXN7 AK129100 4933426M11Rik Hypothetical protein 4933426M11Rik (2 days pregnant adult female oviduct cDNA RIKEN full-length enriched library clone:E230028N11 product:hypothetical Sushi domain / SCR repeat / CCP module containing protein full insert sequence) (10 days neonate skin
chr12 81797015 81797021 + miR-27 6 3 PEAK8348 3UTR EXN7 AK129100 4933426M11Rik Hypothetical protein 4933426M11Rik (2 days pregnant adult female oviduct cDNA RIKEN full-length enriched library clone:E230028N11 product:hypothetical Sushi domain / SCR repeat / CCP module containing protein full insert sequence) (10 days neonate skin
chr12 81797563 81797569 + miR-34 8 4 PEAK8349 3UTR EXN7 AK129100 4933426M11Rik Hypothetical protein 4933426M11Rik (2 days pregnant adult female oviduct cDNA RIKEN full-length enriched library clone:E230028N11 product:hypothetical Sushi domain / SCR repeat / CCP module containing protein full insert sequence) (10 days neonate skin
chr12 81797581 81797588 + miR-17 8 4 PEAK8349 3UTR EXN7 AK129100 4933426M11Rik Hypothetical protein 4933426M11Rik (2 days pregnant adult female oviduct cDNA RIKEN full-length enriched library clone:E230028N11 product:hypothetical Sushi domain / SCR repeat / CCP module containing protein full insert sequence) (10 days neonate skin
chr7 118514181 118514187 + miR-9 9 3 PEAK4796 5UTR EXN5 BC053103 6330503K22Rik 6330503K22Rik protein.
chr2 135752312 135752318 + miR-124 12 4 PEAK1524 CDS EXN5 AK018222 6330527O06Rik Protein C20orf103 homolog precursor.
chr2 135752293 135752299 + miR-138 12 4 PEAK1524 CDS EXN5 AK018222 6330527O06Rik Protein C20orf103 homolog precursor.
chr2 135752325 135752331 + miR-138 12 4 PEAK1524 CDS EXN5 AK018222 6330527O06Rik Protein C20orf103 homolog precursor.
chr12 110039564 110039571 + miR-344 4 4 PEAK8461
chr12 110039597 110039603 + miR-708 8 5 PEAK8462
chr3 105845994 105846000 + miR-138 4 3 PEAK2137 3UTR EXN2 BC052371 6530418L21Rik 10 days neonate cerebellum cDNA RIKEN full-length enriched library clone:6530418L21 product:hypothetical (Trans)glycosidases structure containing protein full insert sequence.
chr6 135200108 135200115 + miR-125 13 3 PEAK4317 3UTR EXN13 NM_028982 8430419L09Rik hypothetical protein LOC74525
chr6 135200604 135200611 + miR-153 5 3 PEAK4318 3UTR EXN13 NM_028982 8430419L09Rik hypothetical protein LOC74525
chr6 135200565 135200572 + miR-125 5 3 PEAK4318 3UTR EXN13 NM_028982 8430419L09Rik hypothetical protein LOC74525
chr9 40534140 40534146 + miR-101 4 3 PEAK5596 3UTR EXN7 NM_133733 9030425E11Rik adipocyte-specific adhesion molecule
chr9 40534113 40534119 + miR-124 4 3 PEAK5596 3UTR EXN7 NM_133733 9030425E11Rik adipocyte-specific adhesion molecule
chr14 54841617 54841624 + miR-124 5 3 PEAK9134 CDS EXN3 AK032037 9130227C08Rik Protein KIAA0323.
chr14 54841630 54841636 + miR-124 5 3 PEAK9134 CDS EXN3 AK032037 9130227C08Rik Protein KIAA0323.
chr14 54841636 54841642 + miR-193 5 3 PEAK9134 CDS EXN3 AK032037 9130227C08Rik Protein KIAA0323.
chr14 54850440 54850446 + miR-181 3 3 PEAK9135 3UTR EXN8 NM_027143 9130227C08Rik hypothetical protein LOC219094
chr14 54850444 54850451 + miR-101 3 3 PEAK9135 3UTR EXN8 NM_027143 9130227C08Rik hypothetical protein LOC219094
chr14 54850466 54850472 + miR-708 3 3 PEAK9135 3UTR EXN8 NM_027143 9130227C08Rik hypothetical protein LOC219094
chr14 54850471 54850478 + miR-26 3 3 PEAK9135 3UTR EXN8 NM_027143 9130227C08Rik hypothetical protein LOC219094
chr5 9485272 9485278 + miR-221 4 3 PEAK3108 3UTR EXN22 NM_172706 9330182L06Rik hypothetical protein LOC231014
chr5 9485450 9485456 + miR-125 2 3 PEAK3109 3UTR EXN22 NM_172706 9330182L06Rik hypothetical protein LOC231014
chr4 154969481 154969487 + miR-27 3 2 PEAK3075 3UTR EXN9 AK034620 9430015G10Rik 12 days embryo embryonic body between diaphragm region and neck cDNA RIKEN full-length enriched library clone:9430015G10 product:hypothetical protein full insert sequence.
chr11 52251548 52251554 + miR-27 6 4 PEAK7378 3UTR EXN3 NM_153117 9530068E07Rik hypothetical protein LOC213673
chr11 52251497 52251503 + miR-181 6 4 PEAK7378 3UTR EXN3 NM_153117 9530068E07Rik hypothetical protein LOC213673
chr11 52251543 52251549 + miR-125 6 4 PEAK7378 3UTR EXN3 NM_153117 9530068E07Rik hypothetical protein LOC213673
chr17 26500038 26500046 + miR-9 13 5 PEAK10330 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr17 26500070 26500076 + miR-193 13 5 PEAK10330 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr17 26500049 26500055 + miR-153 13 5 PEAK10330 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr17 26500067 26500074 + miR-34 13 5 PEAK10330 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr17 26500105 26500112 + miR-101 13 5 PEAK10331 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr17 26500087 26500095 + miR-19 13 5 PEAK10331 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr17 26500112 26500119 + miR-181 13 5 PEAK10331 3UTR EXN9 NM_029870 A930001N09Rik hypothetical protein LOC77128
chr5 140970721 140970728 + miR-124 4 3 PEAK3675 CDS EXN14 BC068301 AA881470 Adult male urinary bladder cDNA RIKEN full-length enriched library clone:9530059E23 product:hypothetical ARM repeat structure containing protein full insert sequence.
chr5 140970713 140970719 + miR-124 4 3 PEAK3675 CDS EXN14 BC068301 AA881470 Adult male urinary bladder cDNA RIKEN full-length enriched library clone:9530059E23 product:hypothetical ARM repeat structure containing protein full insert sequence.
chr5 140970733 140970740 + miR-27 4 3 PEAK3675 CDS EXN14 BC068301 AA881470 Adult male urinary bladder cDNA RIKEN full-length enriched library clone:9530059E23 product:hypothetical ARM repeat structure containing protein full insert sequence.
chr3 27432885 27432891 + miR-27 7 3 PEAK1820 CDS ITN3 AK038691 Aadacl1 Adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230055I01 product:Hypothetical Lipolytic enzymes/esterase/lipase/thioesterase family active site containing protein full insert sequence.
chr3 27432980 27432986 + miR-34 15 4 PEAK1821 CDS ITN3 AK038691 Aadacl1 Adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230055I01 product:Hypothetical Lipolytic enzymes/esterase/lipase/thioesterase family active site containing protein full insert sequence.
chr3 27433016 27433022 + miR-19 15 4 PEAK1821 CDS ITN3 AK038691 Aadacl1 Adult male hypothalamus cDNA RIKEN full-length enriched library clone:A230055I01 product:Hypothetical Lipolytic enzymes/esterase/lipase/thioesterase family active site containing protein full insert sequence.
chr6 86963356 86963363 + let-7 6 4 PEAK4058 3UTR EXN1 BC028270 Aak1 0 day neonate eyeball cDNA RIKEN full-length enriched library clone:E130317J08 product:hypothetical protein full insert sequence (Hypothetical protein).
chr8 113929436 113929442 + miR-27 11 3 PEAK5391 5UTR EXN7 BC033273 Aars Aars protein.
chr16 8493638 8493645 + miR-344 6 5 PEAK9855 CDS EXN3 NM_172961 Abat 4-aminobutyrate aminotransferase
chr16 8536728 8536734 + miR-153 14 3 PEAK9856 3UTR EXN16 NM_172961 Abat 4-aminobutyrate aminotransferase
chr16 8536746 8536754 + miR-30 14 3 PEAK9856 3UTR EXN16 NM_172961 Abat 4-aminobutyrate aminotransferase
chr2 25261170 25261176 + miR-124 7 3 PEAK893 CDS EXN20 NM_007379 Abca2 ATP-binding cassette sub-family A (ABC1)
chr2 25270060 25270066 + miR-19 13 3 PEAK895 3UTR EXN48 NM_007379 Abca2 ATP-binding cassette sub-family A (ABC1)
chr2 25270082 25270089 + miR-124 13 3 PEAK895 3UTR EXN48 NM_007379 Abca2 ATP-binding cassette sub-family A (ABC1)
chr2 25270345 25270352 + miR-181 5 2 PEAK896
chr17 24113142 24113149 + miR-153 5 4 PEAK10291 CDS EXN12 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24113145 24113151 + miR-19 5 4 PEAK10291 CDS EXN12 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24128452 24128459 + miR-34 3 2 PEAK10292 CDS EXN19 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24128441 24128447 + miR-15 3 2 PEAK10292 CDS EXN19 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24128423 24128430 + miR-344 3 2 PEAK10292 CDS EXN19 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24128443 24128449 + miR-34 3 2 PEAK10292 CDS EXN19 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24128526 24128532 + miR-15 2 2 PEAK10293 CDS EXN19 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24128510 24128516 + miR-17 2 2 PEAK10293 CDS EXN19 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24130011 24130018 + miR-124 18 4 PEAK10294 CDS EXN20 BC079617 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24136920 24136926 + miR-27 7 3 PEAK10295 3UTR ITN7 AK038021 Abca3 16 days neonate thymus cDNA RIKEN full-length enriched library clone:A130072E10 product:hypothetical protein full insert sequence.
chr17 24137141 24137147 + miR-19 4 3 PEAK10296 3UTR EXN6 AK084778 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24137139 24137145 + miR-153 4 3 PEAK10296 3UTR EXN6 AK084778 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24137707 24137714 + miR-125 2 2 PEAK10297 5UTR EXN6 AK084778 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 24137675 24137682 + miR-124 2 2 PEAK10297 5UTR EXN6 AK084778 Abca3 Lung RCB-0558 LLC cDNA RIKEN full-length enriched library clone:G730035P14 product:hypothetical protein full insert sequence (13 days embryo heart cDNA RIKEN full-length enriched library clone:D330041H03 product:hypothetical protein full insert sequ
chr17 30842199 30842206 + let-7 11 4 PEAK10345 3UTR EXN15 NM_009593 Abcg1 ATP-binding cassette subfamily G member 1
chr17 30842459 30842465 + miR-19 7 4 PEAK10346 3UTR EXN15 NM_009593 Abcg1 ATP-binding cassette subfamily G member 1
chr17 30842464 30842472 + miR-344 7 4 PEAK10346 3UTR EXN15 NM_009593 Abcg1 ATP-binding cassette subfamily G member 1
chr8 9987652 9987660 + miR-9 8 3 PEAK4963 CDS EXN2 BC043690 BC043690 Adult retina cDNA RIKEN full-length enriched library clone:A930011E11 product:CDNA FLJ14906 FIS CLONE PLACE1005890 WEAKLY SIMILAR TO BEM46 PROTEIN homolog.
chr8 9989638 9989645 + miR-708 4 2 PEAK4965
chr7 79229376 79229382 + miR-19 5 3 PEAK4669 CDS EXN9 NM_018811 Abhd2 alpha/beta hydrolase fold protein
chr7 79234045 79234051 + miR-27 6 3 PEAK4670 3UTR EXN11 NM_018811 Abhd2 alpha/beta hydrolase fold protein
chr7 79234823 79234829 + miR-193 9 3 PEAK4671 3UTR EXN11 NM_018811 Abhd2 alpha/beta hydrolase fold protein
chr7 79234849 79234855 + miR-9 9 3 PEAK4671 3UTR EXN11 NM_018811 Abhd2 alpha/beta hydrolase fold protein
Page 2 of 157 Showing rows 101 - 200 (15664 total)
<   | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table