The Rockefeller University
Laboratory of Molecular Neuro-Oncology
RU Home  >  Research  >  Laboratory of Molecular Neuro-Oncology  >  Ago-miRNA-mRNA ternary map by HITS-CLIP



Brain Argonaute ternary map (mm8)
Enter a key word:
Select an miRNA:
Cluster Height: >=
BC: >=
Sort by:  
then by:  
then by:  
Page 1 of 157 Showing rows 1 - 100 (15664 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block
chrY 598558 598564 - miR-124 2 3 PEAK6547 3UTR EXN17 NM_012008 Ddx3y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3
chrY 600327 600333 - miR-708 2 2 PEAK6549 CDS EXN15 NM_012008 Ddx3y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3
chrY 600302 600309 - miR-124 2 2 PEAK6549 CDS EXN15 NM_012008 Ddx3y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3
chrY 365018 365025 + miR-26 2 2 PEAK6545 3UTR EXN12 NM_012011 Eif2s3y eukaryotic translation initiation factor 2
chrY 236310 236317 + miR-125 2 2 PEAK6543 CDS EXN4 AK140971 Jarid1d 16 days embryo head cDNA RIKEN full-length enriched library clone:C130086O03 product:jumonji AT rich interactive domain 1D (Rbp2 like) full insert sequence.
chrY 353902 353908 + miR-19 3 2 PEAK6544 CDS EXN9 NM_012011 Eif2s3y eukaryotic translation initiation factor 2
chrY 353928 353935 + miR-15 3 2 PEAK6544 CDS EXN9 NM_012011 Eif2s3y eukaryotic translation initiation factor 2
chrY 599290 599296 - miR-181 2 2 PEAK6548 3UTR EXN17 NM_012008 Ddx3y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3
chrY 236296 236302 + miR-124 2 2 PEAK6543 CDS EXN4 AK140971 Jarid1d 16 days embryo head cDNA RIKEN full-length enriched library clone:C130086O03 product:jumonji AT rich interactive domain 1D (Rbp2 like) full insert sequence.
chrX 67681900 67681907 - miR-21 8 4 PEAK6342 3UTR EXN9 NM_138309 Cd99l2 Cd99 antigen-like 2
chrX 67681885 67681892 - miR-708 8 4 PEAK6342 3UTR EXN9 NM_138309 Cd99l2 Cd99 antigen-like 2
chrX 67681895 67681902 - miR-27 8 4 PEAK6342 3UTR EXN9 NM_138309 Cd99l2 Cd99 antigen-like 2
chrX 147239353 147239360 + miR-193 5 3 PEAK6488 CDS EXN46 AY772010 Huwe1 HECT UBA and WWE domain containing protein 1 (EC 6.3.2.-) (E3 ubiquitin protein ligase URE-B1) (E3Histone).
chrX 147219580 147219586 + miR-34 5 3 PEAK6487 CDS EXN28 AY772010 Huwe1 HECT UBA and WWE domain containing protein 1 (EC 6.3.2.-) (E3 ubiquitin protein ligase URE-B1) (E3Histone).
chrX 147203052 147203058 + miR-34 5 4 PEAK6486 CDS EXN20 AK031374 Huwe1 13 days embryo male testis cDNA RIKEN full-length enriched library clone:6030414N10 product:hypothetical ARM repeat structure containing protein full insert sequence.
chrX 12450374 12450381 + miR-181 22 4 PEAK6227 3UTR EXN1 BC083059 Ddx3x Hypothetical protein.
chrX 12450367 12450375 + miR-181 22 4 PEAK6227 3UTR EXN1 BC083059 Ddx3x Hypothetical protein.
chrX 131147483 131147489 + miR-26 18 5 PEAK6443 CDS EXN10 BC085157 Gprasp1 Gprasp1 protein.
chrX 81955598 81955605 - miR-15 4 3 PEAK6373 3UTR EXN20 AK169424 Gyk Glycerol kinase (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK).
chrX 52854330 52854337 + let-7 3 2 PEAK6289 3UTR EXN17 NM_172779 6330505F04Rik hypothetical protein LOC236790
chrX 52854348 52854355 + miR-17 3 2 PEAK6289 3UTR EXN17 NM_172779 6330505F04Rik hypothetical protein LOC236790
chrX 12449273 12449279 + miR-125 7 4 PEAK6226 3UTR EXN17 NM_010028 Ddx3x DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
chrX 12450337 12450343 + miR-9 22 4 PEAK6227 3UTR EXN1 BC083059 Ddx3x Hypothetical protein.
chrX 12450364 12450371 + miR-26 22 4 PEAK6227 3UTR EXN1 BC083059 Ddx3x Hypothetical protein.
chrX 12450362 12450368 + miR-17 22 4 PEAK6227 3UTR EXN1 BC083059 Ddx3x Hypothetical protein.
chrX 67681808 67681814 - miR-124 5 4 PEAK6341 3UTR EXN9 NM_138309 Cd99l2 Cd99 antigen-like 2
chrX 67681458 67681466 - miR-124 5 5 PEAK6339 3UTR EXN9 NM_138309 Cd99l2 Cd99 antigen-like 2
chrX 66607221 66607227 - miR-19 3 2 PEAK6335 CDS EXN10 NM_001038991 Ids iduronate 2-sulfatase isoform b
chrX 147550224 147550230 + miR-708 5 2 PEAK6498
chrX 129934621 129934629 - let-7 16 3 PEAK6435
chrX 147203027 147203033 + miR-27 5 4 PEAK6486 CDS EXN20 AK031374 Huwe1 13 days embryo male testis cDNA RIKEN full-length enriched library clone:6030414N10 product:hypothetical ARM repeat structure containing protein full insert sequence.
chrX 70116969 70116976 - let-7 19 5 PEAK6359 CDS EXN6 NM_008478 L1cam L1 cell adhesion molecule
chrX 129934618 129934625 - miR-125 16 3 PEAK6435
chrX 148735076 148735083 + let-7 3 2 PEAK6501 3UTR EXN7 NM_173780 Klf8 Kruppel-like factor 8
chrX 148735058 148735064 + miR-26 3 2 PEAK6501 3UTR EXN7 NM_173780 Klf8 Kruppel-like factor 8
chrX 22377617 22377624 - miR-27 4 2 PEAK6254 CDS EXN8 BC100393 Klhl13 10 11 days embryo whole body cDNA RIKEN full-length enriched library clone:2810471O07 product:RIKEN cDNA 1200009K10.
chrX 90506770 90506777 + miR-124 2 2 PEAK6379 CDS ITN2 NM_001039061 Klhl15 kelch-like 15 isoform a
chrX 129934639 129934645 - miR-26 16 3 PEAK6435
chrX 66619022 66619028 - miR-221 14 4 PEAK6336 CDS EXN7 NM_001038991 Ids iduronate 2-sulfatase isoform b
chrX 102218498 102218505 + miR-19 2 2 PEAK6421 5UTR EXN1 NM_025379 Cox7b cytochrome c oxidase subunit VIIb
chrX 8051502 8051508 + miR-181 6 3 PEAK6189 3UTR EXN1 NM_175327 B630019K06Rik hypothetical protein LOC102941
chrX 8051518 8051524 + miR-124 6 3 PEAK6189 3UTR EXN1 NM_175327 B630019K06Rik hypothetical protein LOC102941
chrX 8051156 8051162 + miR-138 7 3 PEAK6188 3UTR EXN1 NM_175327 B630019K06Rik hypothetical protein LOC102941
chrX 8051151 8051157 + miR-101 7 3 PEAK6188 3UTR EXN1 NM_175327 B630019K06Rik hypothetical protein LOC102941
chrX 66624506 66624513 - miR-138 4 3 PEAK6337 5UTR EXN3 NM_001038991 Ids iduronate 2-sulfatase isoform b
chrX 102224593 102224599 + miR-181 8 5 PEAK6422 3UTR EXN3 NM_025379 Cox7b cytochrome c oxidase subunit VIIb
chrX 102224605 102224611 + miR-9 8 5 PEAK6422 3UTR EXN3 NM_025379 Cox7b cytochrome c oxidase subunit VIIb
chrX 32413886 32413892 + let-7 3 2 PEAK6257 CDS EXN5 AK033257 Dock11 15 days embryo male testis cDNA RIKEN full-length enriched library clone:8030476J24 product:inferred: human CLASP-4 (Homo sapiens) full insert sequence.
chrX 66624532 66624538 - miR-21 4 3 PEAK6337 5UTR EXN3 NM_001038991 Ids iduronate 2-sulfatase isoform b
chrX 66607210 66607216 - miR-193 3 2 PEAK6335 CDS EXN10 NM_001038991 Ids iduronate 2-sulfatase isoform b
chrX 70169598 70169604 - miR-27 6 3 PEAK6360 3UTR EXN8 NM_019870 Ard1 N-acetyltransferase ARD1
chrX 108481505 108481513 + let-7 7 3 PEAK6429 CDS EXN8 NM_026565 9430083G14Rik hypothetical protein LOC68117
chrX 108481509 108481515 + miR-125 7 3 PEAK6429 CDS EXN8-ITN8 NM_026565 9430083G14Rik hypothetical protein LOC68117
chrX 12796223 12796229 + miR-708 5 4 PEAK6235 CDS EXN3 NM_011823 Gpr34 G protein-coupled receptor 34
chrX 12796239 12796246 + miR-17 5 4 PEAK6235 CDS EXN3 NM_011823 Gpr34 G protein-coupled receptor 34
chrX 142442289 142442295 + miR-27 8 5 PEAK6478 3UTR EXN6 NM_008312 Htr2c 5-hydroxytryptamine (serotonin) receptor 2C
chrX 11213474 11213482 - miR-9 7 4 PEAK6209 CDS EXN4 NM_029510 Bcor BCL-6 interacting corepressor isoform a
chrX 11197410 11197416 - miR-17 3 3 PEAK6208 CDS EXN12 NM_029510 Bcor BCL-6 interacting corepressor isoform a
chrX 153197288 153197294 - miR-27 14 3 PEAK6508 CDS EXN19 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 153197292 153197298 - miR-124 14 3 PEAK6508 CDS EXN19 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 153167080 153167086 - miR-34 4 3 PEAK6506 3UTR EXN21 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 153167066 153167072 - miR-125 4 3 PEAK6506 3UTR EXN21 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 108481430 108481436 + miR-138 2 2 PEAK6428 CDS EXN8 NM_026565 9430083G14Rik hypothetical protein LOC68117
chrX 66109756 66109762 + miR-124 9 4 PEAK6310 CDS EXN13 NM_008032 Aff2 AF4/FMR2 family member 2
chrX 65805704 65805710 + miR-138 5 4 PEAK6309 CDS EXN3 NM_008032 Aff2 AF4/FMR2 family member 2
chrX 65805669 65805675 + miR-708 5 4 PEAK6309 CDS EXN3 NM_008032 Aff2 AF4/FMR2 family member 2
chrX 103600861 103600867 - miR-17 5 3 PEAK6427 CDS EXN5 NM_008409 Itm2a integral membrane protein 2A
chrX 103600835 103600841 - miR-124 5 3 PEAK6427 CDS EXN5 NM_008409 Itm2a integral membrane protein 2A
chrX 103600859 103600865 - miR-19 5 3 PEAK6427 CDS EXN5 NM_008409 Itm2a integral membrane protein 2A
chrX 103600004 103600010 - miR-27 3 3 PEAK6426 3UTR EXN6 NM_008409 Itm2a integral membrane protein 2A
chrX 103599976 103599982 - miR-181 3 3 PEAK6426 3UTR EXN6 NM_008409 Itm2a integral membrane protein 2A
chrX 103599989 103599995 - miR-101 3 3 PEAK6426 3UTR EXN6 NM_008409 Itm2a integral membrane protein 2A
chrX 11197394 11197402 - miR-125 3 3 PEAK6208 CDS EXN12 NM_029510 Bcor BCL-6 interacting corepressor isoform a
chrX 69940600 69940606 - miR-124 12 5 PEAK6350 CDS EXN7 NM_012060 Bcap31 B-cell receptor-associated protein 31
chrX 153197301 153197307 - miR-138 14 3 PEAK6508 CDS EXN19 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 153215857 153215865 - miR-27 7 2 PEAK6509 CDS EXN14 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 153216221 153216227 - miR-9 5 3 PEAK6510 CDS EXN13 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 147239383 147239389 + miR-30 5 3 PEAK6488 CDS ITN46 AY772010 Huwe1 HECT UBA and WWE domain containing protein 1 (EC 6.3.2.-) (E3 ubiquitin protein ligase URE-B1) (E3Histone).
chrX 70196903 70196909 - let-7 4 4 PEAK6361 3UTR EXN26 NM_008224 Hcfc1 host cell factor C1
chrX 20008956 20008962 + miR-181 3 5 PEAK6245 CDS EXN6 NM_009703 Araf v-raf murine sarcoma 3611 viral oncogene
chrX 20008963 20008970 + miR-15 3 5 PEAK6245 CDS EXN6 NM_009703 Araf v-raf murine sarcoma 3611 viral oncogene
chrX 70266733 70266739 - miR-124 14 4 PEAK6364 3UTR EXN14 AY184362 Irak1 Interleukin-1 receptor-associated kinase 1 (EC 2.7.1.37) (IRAK-1) (IRAK) (Pelle-like protein kinase) (mPLK).
chrX 70169595 70169602 - miR-181 6 3 PEAK6360 3UTR EXN8 NM_019870 Ard1 N-acetyltransferase ARD1
chrX 153197299 153197305 - miR-193 14 3 PEAK6508 CDS EXN19 AK122399 Cnksr2 Connector enhancer of kinase suppressor of ras 2 (Connector enhancer of KSR2) (CNK2).
chrX 70196917 70196924 - miR-708 4 4 PEAK6361 3UTR EXN26 NM_008224 Hcfc1 host cell factor C1
chrX 20008953 20008960 + miR-27 3 5 PEAK6245 CDS EXN6 NM_009703 Araf v-raf murine sarcoma 3611 viral oncogene
chrX 69940577 69940583 - miR-15 12 5 PEAK6350 CDS EXN7 NM_012060 Bcap31 B-cell receptor-associated protein 31
chrX 69940593 69940601 - miR-9 12 5 PEAK6350 CDS EXN7 NM_012060 Bcap31 B-cell receptor-associated protein 31
chrX 69939103 69939109 - miR-9 8 4 PEAK6349 3UTR EXN8 NM_012060 Bcap31 B-cell receptor-associated protein 31
chrX 69939142 69939149 - miR-344 8 4 PEAK6349 3UTR EXN8 NM_012060 Bcap31 B-cell receptor-associated protein 31
chrX 70203106 70203112 - miR-15 4 3 PEAK6363 CDS EXN17 NM_008224 Hcfc1 host cell factor C1
chrX 70203091 70203097 - let-7 4 3 PEAK6363 CDS EXN17 NM_008224 Hcfc1 host cell factor C1
chrX 70202396 70202402 - miR-101 2 2 PEAK6362 CDS EXN17 NM_008224 Hcfc1 host cell factor C1
chrX 131145815 131145821 + miR-124 14 4 PEAK6441 5UTR EXN10 BC085157 Gprasp1 Gprasp1 protein.
chrX 131145808 131145814 + miR-21 14 4 PEAK6441 5UTR EXN10 BC085157 Gprasp1 Gprasp1 protein.
chrX 70169634 70169640 - miR-30 6 3 PEAK6360 3UTR EXN8 BC027219 Ard1 N-terminal acetyltransferase complex ARD1 subunit homolog (EC 2.3.1.88) (EC 2.3.1.-).
chrX 66607122 66607128 - miR-193 4 3 PEAK6334 CDS EXN10 NM_001038991 Ids iduronate 2-sulfatase isoform b
chrX 130150850 130150856 - miR-30 3 2 PEAK6438 3UTR EXN5 NM_026139 Armcx2 armadillo repeat containing X-linked 2
chrX 99592277 99592284 + miR-124 18 5 PEAK6401 3UTR EXN6 NM_009767 Chic1 cysteine-rich hydrophobic domain 1
chrX 69800512 69800518 + miR-221 15 3 PEAK6346 CDS EXN16 AK032322 Atp2b3 Adult male olfactory brain cDNA RIKEN full-length enriched library clone:6430519O13 product:PLASMA MEMBRANE CALCIUM-TRANSPORTING ATPASE 3 (EC 3.6.3.8) (PMCA3) (PLASMA MEMBRANE CALCIUM PUMP ISOFORM 3) (PLASMA MEMBRANE CALCIUM ATPASE ISOFORM 3) homolog.
Page 1 of 157 Showing rows 1 - 100 (15664 total)
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10   >   Next Block

Get the whole table